Hb_000869_060

Information

Type -
Description -
Location Contig869: 54633-55265
Sequence    

Annotation

kegg
ID pop:POPTR_0012s00610g
description POPTRDRAFT_661635; hypothetical protein
nr
ID XP_010099421.1
description hypothetical protein L484_003245 [Morus notabilis]
swissprot
ID Q9SJ52
description Protein YLS9 OS=Arabidopsis thaliana GN=YLS9 PE=2 SV=1
trembl
ID W9R9V3
description Uncharacterized protein OS=Morus notabilis GN=L484_003245 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_61081: 54555-55746
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000869_060 0.0 - - hypothetical protein L484_003245 [Morus notabilis]
2 Hb_009119_030 0.2047492668 - - GMFP4 [Medicago truncatula]
3 Hb_004935_080 0.2227275906 - - AT3g13060/MGH6_17 [Arabidopsis thaliana]
4 Hb_000130_190 0.2257612776 - - PREDICTED: uncharacterized protein LOC105638437 [Jatropha curcas]
5 Hb_001252_200 0.2296784635 - - PREDICTED: uncharacterized protein LOC105640649 [Jatropha curcas]
6 Hb_144550_020 0.2318716546 - - -
7 Hb_169329_010 0.2330051638 - - PREDICTED: probable ADP-ribosylation factor GTPase-activating protein AGD14 isoform X2 [Jatropha curcas]
8 Hb_007889_050 0.2349310325 - - Kynurenine formamidase [Gossypium arboreum]
9 Hb_068569_010 0.2351997389 - - -
10 Hb_010964_020 0.2355887512 - - RNA helicase [Arabidopsis thaliana]
11 Hb_000136_190 0.236169137 - - PREDICTED: protein-S-isoprenylcysteine O-methyltransferase A-like isoform X1 [Jatropha curcas]
12 Hb_001005_150 0.2367263031 - - -
13 Hb_178620_010 0.2402402729 - - ADP-ribosylation factor, arf, putative [Ricinus communis]
14 Hb_088428_010 0.2408247753 - - PREDICTED: E3 ubiquitin-protein ligase RNF181 homolog [Jatropha curcas]
15 Hb_177152_010 0.2410323188 - - glycosyl hydrolase family 38 family protein [Populus trichocarpa]
16 Hb_065841_010 0.2417802643 - - hypothetical protein JCGZ_18376 [Jatropha curcas]
17 Hb_000330_160 0.2439855501 - - hypothetical protein JCGZ_04462 [Jatropha curcas]
18 Hb_141132_010 0.2459363097 - - Hsc70-interacting protein, putative [Ricinus communis]
19 Hb_010254_020 0.2491863407 - - NBS-LRR resistance protein RGH1 [Manihot esculenta]
20 Hb_002498_050 0.2494286906 - - PREDICTED: aspartic proteinase-like [Jatropha curcas]

Gene co-expression network

sample Hb_000869_060 Hb_000869_060 Hb_009119_030 Hb_009119_030 Hb_000869_060--Hb_009119_030 Hb_004935_080 Hb_004935_080 Hb_000869_060--Hb_004935_080 Hb_000130_190 Hb_000130_190 Hb_000869_060--Hb_000130_190 Hb_001252_200 Hb_001252_200 Hb_000869_060--Hb_001252_200 Hb_144550_020 Hb_144550_020 Hb_000869_060--Hb_144550_020 Hb_169329_010 Hb_169329_010 Hb_000869_060--Hb_169329_010 Hb_002320_070 Hb_002320_070 Hb_009119_030--Hb_002320_070 Hb_002411_130 Hb_002411_130 Hb_009119_030--Hb_002411_130 Hb_009119_030--Hb_000130_190 Hb_000159_110 Hb_000159_110 Hb_009119_030--Hb_000159_110 Hb_001901_080 Hb_001901_080 Hb_009119_030--Hb_001901_080 Hb_121467_010 Hb_121467_010 Hb_009119_030--Hb_121467_010 Hb_070469_010 Hb_070469_010 Hb_004935_080--Hb_070469_010 Hb_004935_080--Hb_002320_070 Hb_004935_080--Hb_000130_190 Hb_003038_220 Hb_003038_220 Hb_004935_080--Hb_003038_220 Hb_013358_100 Hb_013358_100 Hb_004935_080--Hb_013358_100 Hb_009393_200 Hb_009393_200 Hb_004935_080--Hb_009393_200 Hb_028707_080 Hb_028707_080 Hb_000130_190--Hb_028707_080 Hb_000130_190--Hb_002320_070 Hb_008029_020 Hb_008029_020 Hb_000130_190--Hb_008029_020 Hb_019053_020 Hb_019053_020 Hb_000130_190--Hb_019053_020 Hb_001005_150 Hb_001005_150 Hb_001252_200--Hb_001005_150 Hb_106415_010 Hb_106415_010 Hb_001252_200--Hb_106415_010 Hb_007083_020 Hb_007083_020 Hb_001252_200--Hb_007083_020 Hb_051424_010 Hb_051424_010 Hb_001252_200--Hb_051424_010 Hb_013691_010 Hb_013691_010 Hb_001252_200--Hb_013691_010 Hb_000087_030 Hb_000087_030 Hb_001252_200--Hb_000087_030 Hb_012395_080 Hb_012395_080 Hb_144550_020--Hb_012395_080 Hb_006269_040 Hb_006269_040 Hb_144550_020--Hb_006269_040 Hb_000136_190 Hb_000136_190 Hb_144550_020--Hb_000136_190 Hb_002370_040 Hb_002370_040 Hb_144550_020--Hb_002370_040 Hb_003854_020 Hb_003854_020 Hb_144550_020--Hb_003854_020 Hb_000330_160 Hb_000330_160 Hb_144550_020--Hb_000330_160 Hb_000258_360 Hb_000258_360 Hb_169329_010--Hb_000258_360 Hb_059641_010 Hb_059641_010 Hb_169329_010--Hb_059641_010 Hb_177152_010 Hb_177152_010 Hb_169329_010--Hb_177152_010 Hb_169329_010--Hb_004935_080 Hb_169329_010--Hb_013358_100 Hb_169329_010--Hb_000136_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
44.4341 62.7334 22.0586 215.327 125.041 185.209
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
13.7205 2.78776 0.775692 11.338 26.7677

CAGE analysis