Hb_000869_110

Information

Type -
Description -
Location Contig869: 145556-150546
Sequence    

Annotation

kegg
ID rcu:RCOM_1706760
description choline monooxygenase, putative (EC:1.14.15.7)
nr
ID XP_012074438.1
description PREDICTED: choline monooxygenase, chloroplastic isoform X1 [Jatropha curcas]
swissprot
ID Q9SZR0
description Choline monooxygenase, chloroplastic OS=Arabidopsis thaliana GN=At4g29890 PE=2 SV=2
trembl
ID A0A067KIJ9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_10308 PE=4 SV=1
Gene Ontology
ID GO:0005488
description choline chloroplastic isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000869_110 0.0 - - PREDICTED: choline monooxygenase, chloroplastic isoform X1 [Jatropha curcas]
2 Hb_002392_050 0.0002041641 - - PREDICTED: probable inactive purple acid phosphatase 16 isoform X4 [Jatropha curcas]
3 Hb_039112_010 0.0017125828 - - -
4 Hb_001998_060 0.0538731029 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
5 Hb_031284_050 0.0611008689 - - -
6 Hb_034587_030 0.0775835353 - - -
7 Hb_018609_040 0.0814181042 - - PREDICTED: phospholipase A1-II 1-like [Jatropha curcas]
8 Hb_000270_800 0.0815475783 - - -
9 Hb_075060_030 0.0816594093 - - PREDICTED: uncharacterized protein LOC104593656 [Nelumbo nucifera]
10 Hb_003837_020 0.1076261664 - - PREDICTED: uncharacterized protein LOC103710465 isoform X1 [Phoenix dactylifera]
11 Hb_115720_010 0.1231333675 - - PREDICTED: uncharacterized protein LOC105638432 [Jatropha curcas]
12 Hb_002903_010 0.1686761368 - - 60S ribosomal protein L37-3 [Morus notabilis]
13 Hb_000804_030 0.1794166218 - - Protein C14orf111, putative [Ricinus communis]
14 Hb_000184_190 0.196559973 - - hypothetical protein VITISV_016970 [Vitis vinifera]
15 Hb_000504_010 0.2035809551 - - oleosin 18.2 kDa-like [Jatropha curcas]
16 Hb_001386_080 0.2156338845 - - hypothetical protein JCGZ_06052 [Jatropha curcas]
17 Hb_008092_140 0.2195317301 - - PREDICTED: uncharacterized protein LOC103636948 [Zea mays]
18 Hb_002498_090 0.2205818471 - - -
19 Hb_002997_130 0.2259231935 - - -
20 Hb_028462_010 0.2262809785 - - PREDICTED: uncharacterized protein LOC101509514 [Cicer arietinum]

Gene co-expression network

sample Hb_000869_110 Hb_000869_110 Hb_002392_050 Hb_002392_050 Hb_000869_110--Hb_002392_050 Hb_039112_010 Hb_039112_010 Hb_000869_110--Hb_039112_010 Hb_001998_060 Hb_001998_060 Hb_000869_110--Hb_001998_060 Hb_031284_050 Hb_031284_050 Hb_000869_110--Hb_031284_050 Hb_034587_030 Hb_034587_030 Hb_000869_110--Hb_034587_030 Hb_018609_040 Hb_018609_040 Hb_000869_110--Hb_018609_040 Hb_002392_050--Hb_039112_010 Hb_002392_050--Hb_001998_060 Hb_002392_050--Hb_031284_050 Hb_002392_050--Hb_034587_030 Hb_002392_050--Hb_018609_040 Hb_039112_010--Hb_001998_060 Hb_039112_010--Hb_031284_050 Hb_039112_010--Hb_034587_030 Hb_039112_010--Hb_018609_040 Hb_115720_010 Hb_115720_010 Hb_001998_060--Hb_115720_010 Hb_001998_060--Hb_031284_050 Hb_001998_060--Hb_034587_030 Hb_031284_050--Hb_034587_030 Hb_031284_050--Hb_018609_040 Hb_000270_800 Hb_000270_800 Hb_031284_050--Hb_000270_800 Hb_075060_030 Hb_075060_030 Hb_031284_050--Hb_075060_030 Hb_034587_030--Hb_018609_040 Hb_034587_030--Hb_000270_800 Hb_034587_030--Hb_075060_030 Hb_018609_040--Hb_000270_800 Hb_018609_040--Hb_075060_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.111485 0.2631 0 0 0

CAGE analysis