Hb_000875_080

Information

Type -
Description -
Location Contig875: 170873-173172
Sequence    

Annotation

kegg
ID bvg:104896149
description probable sesquiterpene synthase
nr
ID XP_012443585.1
description PREDICTED: (+)-delta-cadinene synthase isozyme XC14-like isoform X2 [Gossypium raimondii]
swissprot
ID Q6Q3H3
description (-)-germacrene D synthase OS=Vitis vinifera GN=VIT_19s0014g04930 PE=1 SV=1
trembl
ID F6HN25
description Putative uncharacterized protein OS=Vitis vinifera GN=VIT_18s0001g05430 PE=4 SV=1
Gene Ontology
ID GO:0000287
description (-)-germacrene d synthase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_61251: 170464-171206 , PASA_asmbl_61252: 171272-171745 , PASA_asmbl_61253: 171813-172162 , PASA_asmbl_61254: 171764-172473
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000875_080 0.0 - - PREDICTED: (+)-delta-cadinene synthase isozyme XC14-like isoform X2 [Gossypium raimondii]
2 Hb_000336_210 0.0515213039 - - PREDICTED: probable adenylate kinase 7, mitochondrial [Jatropha curcas]
3 Hb_002272_050 0.0558924292 - - microsomal signal peptidase 23 kD subunit, putative [Ricinus communis]
4 Hb_000049_140 0.0618554488 - - PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 9, mitochondrial [Jatropha curcas]
5 Hb_000297_160 0.0637406889 - - PREDICTED: alpha/beta hydrolase domain-containing protein 11 [Jatropha curcas]
6 Hb_005271_040 0.0658290834 - - PREDICTED: serine racemase [Jatropha curcas]
7 Hb_171900_090 0.0693756237 - - conserved hypothetical protein [Ricinus communis]
8 Hb_001025_090 0.0722766537 - - PREDICTED: FKBP12-interacting protein of 37 kDa [Jatropha curcas]
9 Hb_000260_630 0.073076294 - - PREDICTED: altered inheritance rate of mitochondria protein 25 isoform X1 [Jatropha curcas]
10 Hb_163175_010 0.0736386711 - - hypothetical protein CISIN_1g036035mg, partial [Citrus sinensis]
11 Hb_000905_110 0.0762748185 - - arginine/serine rich splicing factor sf4/14, putative [Ricinus communis]
12 Hb_000803_270 0.0766273851 - - PREDICTED: nuclear cap-binding protein subunit 1 [Jatropha curcas]
13 Hb_000270_680 0.0782415911 - - hypothetical protein POPTR_0015s08420g [Populus trichocarpa]
14 Hb_014834_150 0.0799713422 - - PREDICTED: phosphatidylserine decarboxylase proenzyme 1, mitochondrial isoform X1 [Jatropha curcas]
15 Hb_001472_100 0.0801859078 - - ubiquitin-conjugating enzyme h, putative [Ricinus communis]
16 Hb_003861_060 0.0807835491 - - PREDICTED: treacle protein [Jatropha curcas]
17 Hb_000816_250 0.0811487366 - - PREDICTED: uncharacterized protein LOC105649197 isoform X1 [Jatropha curcas]
18 Hb_005144_090 0.082594456 - - PREDICTED: vacuolar protein sorting-associated protein 24 homolog 1-like [Citrus sinensis]
19 Hb_002936_010 0.0842626382 - - PREDICTED: uncharacterized protein LOC103949110 [Pyrus x bretschneideri]
20 Hb_005288_130 0.0846276247 - - protein with unknown function [Ricinus communis]

Gene co-expression network

sample Hb_000875_080 Hb_000875_080 Hb_000336_210 Hb_000336_210 Hb_000875_080--Hb_000336_210 Hb_002272_050 Hb_002272_050 Hb_000875_080--Hb_002272_050 Hb_000049_140 Hb_000049_140 Hb_000875_080--Hb_000049_140 Hb_000297_160 Hb_000297_160 Hb_000875_080--Hb_000297_160 Hb_005271_040 Hb_005271_040 Hb_000875_080--Hb_005271_040 Hb_171900_090 Hb_171900_090 Hb_000875_080--Hb_171900_090 Hb_000905_110 Hb_000905_110 Hb_000336_210--Hb_000905_110 Hb_014834_150 Hb_014834_150 Hb_000336_210--Hb_014834_150 Hb_000336_210--Hb_002272_050 Hb_000336_210--Hb_171900_090 Hb_000336_210--Hb_000297_160 Hb_002272_050--Hb_171900_090 Hb_000359_040 Hb_000359_040 Hb_002272_050--Hb_000359_040 Hb_002272_050--Hb_005271_040 Hb_002272_050--Hb_000297_160 Hb_005144_090 Hb_005144_090 Hb_000049_140--Hb_005144_090 Hb_000049_140--Hb_000336_210 Hb_004453_130 Hb_004453_130 Hb_000049_140--Hb_004453_130 Hb_011618_050 Hb_011618_050 Hb_000049_140--Hb_011618_050 Hb_000049_140--Hb_000297_160 Hb_000270_680 Hb_000270_680 Hb_000297_160--Hb_000270_680 Hb_001959_110 Hb_001959_110 Hb_000297_160--Hb_001959_110 Hb_000297_160--Hb_005144_090 Hb_000260_470 Hb_000260_470 Hb_005271_040--Hb_000260_470 Hb_163175_010 Hb_163175_010 Hb_005271_040--Hb_163175_010 Hb_002681_100 Hb_002681_100 Hb_005271_040--Hb_002681_100 Hb_000663_060 Hb_000663_060 Hb_005271_040--Hb_000663_060 Hb_000789_320 Hb_000789_320 Hb_171900_090--Hb_000789_320 Hb_164390_010 Hb_164390_010 Hb_171900_090--Hb_164390_010 Hb_183433_010 Hb_183433_010 Hb_171900_090--Hb_183433_010 Hb_000176_020 Hb_000176_020 Hb_171900_090--Hb_000176_020 Hb_001025_090 Hb_001025_090 Hb_171900_090--Hb_001025_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.9447 1.63099 3.96594 2.68248 2.48826 1.72848
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.32611 3.07443 1.42146 2.9119 2.04237

CAGE analysis