Hb_000875_100

Information

Type -
Description -
Location Contig875: 174524-179509
Sequence    

Annotation

kegg
ID rcu:RCOM_1148800
description tho2 protein, putative
nr
ID KDP38157.1
description hypothetical protein JCGZ_04800 [Jatropha curcas]
swissprot
ID F4IAT2
description THO complex subunit 2 OS=Arabidopsis thaliana GN=THO2 PE=1 SV=1
trembl
ID A0A067KPU6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04800 PE=4 SV=1
Gene Ontology
ID GO:0007165
description tho complex subunit 2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000875_100 0.0 - - hypothetical protein JCGZ_04800 [Jatropha curcas]
2 Hb_121031_010 0.0611759652 - - PREDICTED: uncharacterized protein LOC104104926 [Nicotiana tomentosiformis]
3 Hb_034050_010 0.0717596246 - - PREDICTED: uncharacterized protein LOC103498182 [Cucumis melo]
4 Hb_001014_200 0.1354237601 - - -
5 Hb_004162_300 0.1384434618 - - monovalent cation:proton antiporter, putative [Ricinus communis]
6 Hb_027014_010 0.1462748099 - - PREDICTED: uncharacterized protein LOC105650298, partial [Jatropha curcas]
7 Hb_163115_010 0.1856111754 - - -
8 Hb_183366_010 0.2270866295 - - PREDICTED: uncharacterized protein LOC105638675 [Jatropha curcas]
9 Hb_110486_010 0.2306624743 - - -
10 Hb_001809_040 0.2403061888 - - PREDICTED: uncharacterized protein LOC105638660 [Jatropha curcas]
11 Hb_011537_120 0.2525967471 - - -
12 Hb_046707_010 0.2528037977 - - PREDICTED: uncharacterized protein LOC104887079 [Beta vulgaris subsp. vulgaris]
13 Hb_000599_060 0.2570250608 - - PREDICTED: legumin A-like [Jatropha curcas]
14 Hb_004532_010 0.2839364721 - - PREDICTED: uncharacterized protein LOC105800934 [Gossypium raimondii]
15 Hb_037271_010 0.2949153924 - - PREDICTED: uncharacterized protein LOC105795045 [Gossypium raimondii]
16 Hb_179447_010 0.2951804819 - - hypothetical protein JCGZ_15340 [Jatropha curcas]
17 Hb_033883_050 0.3066966286 - - -
18 Hb_003304_040 0.3102513297 - - hypothetical protein CICLE_v10003343mg, partial [Citrus clementina]
19 Hb_106159_010 0.316413525 - - -
20 Hb_003702_050 0.3231260719 - - PREDICTED: uncharacterized protein LOC105649649 [Jatropha curcas]

Gene co-expression network

sample Hb_000875_100 Hb_000875_100 Hb_121031_010 Hb_121031_010 Hb_000875_100--Hb_121031_010 Hb_034050_010 Hb_034050_010 Hb_000875_100--Hb_034050_010 Hb_001014_200 Hb_001014_200 Hb_000875_100--Hb_001014_200 Hb_004162_300 Hb_004162_300 Hb_000875_100--Hb_004162_300 Hb_027014_010 Hb_027014_010 Hb_000875_100--Hb_027014_010 Hb_163115_010 Hb_163115_010 Hb_000875_100--Hb_163115_010 Hb_121031_010--Hb_034050_010 Hb_121031_010--Hb_004162_300 Hb_121031_010--Hb_027014_010 Hb_121031_010--Hb_163115_010 Hb_183366_010 Hb_183366_010 Hb_121031_010--Hb_183366_010 Hb_034050_010--Hb_004162_300 Hb_034050_010--Hb_027014_010 Hb_034050_010--Hb_163115_010 Hb_034050_010--Hb_183366_010 Hb_011537_120 Hb_011537_120 Hb_001014_200--Hb_011537_120 Hb_001014_200--Hb_121031_010 Hb_033883_050 Hb_033883_050 Hb_001014_200--Hb_033883_050 Hb_001014_200--Hb_034050_010 Hb_110486_010 Hb_110486_010 Hb_001014_200--Hb_110486_010 Hb_004162_300--Hb_027014_010 Hb_004162_300--Hb_163115_010 Hb_004162_300--Hb_183366_010 Hb_001809_040 Hb_001809_040 Hb_004162_300--Hb_001809_040 Hb_027014_010--Hb_163115_010 Hb_027014_010--Hb_183366_010 Hb_027014_010--Hb_001809_040 Hb_163115_010--Hb_183366_010 Hb_163115_010--Hb_001809_040 Hb_000599_060 Hb_000599_060 Hb_163115_010--Hb_000599_060 Hb_004532_010 Hb_004532_010 Hb_163115_010--Hb_004532_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0.048492
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0314949 0 0 0 0

CAGE analysis