Hb_000876_010

Information

Type -
Description -
Location Contig876: 802-1132
Sequence    

Annotation

kegg
ID tcc:TCM_022272
description hypothetical protein
nr
ID XP_007027439.1
description Uncharacterized protein TCM_022272 [Theobroma cacao]
swissprot
ID -
description -
trembl
ID A0A061ESX9
description Uncharacterized protein OS=Theobroma cacao GN=TCM_022272 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000876_010 0.0 - - Uncharacterized protein TCM_022272 [Theobroma cacao]
2 Hb_005723_070 0.128804714 - - hypothetical protein CISIN_1g011514mg [Citrus sinensis]
3 Hb_002450_130 0.1546765159 - - hypothetical protein JCGZ_06565 [Jatropha curcas]
4 Hb_002972_060 0.1617319272 transcription factor TF Family: M-type mads box protein, putative [Ricinus communis]
5 Hb_003025_060 0.1635100536 - - PREDICTED: protein TOO MANY MOUTHS [Jatropha curcas]
6 Hb_000130_170 0.185328578 - - -
7 Hb_009119_010 0.1899899726 - - -
8 Hb_008096_020 0.19479366 - - -
9 Hb_000300_140 0.2073472951 transcription factor TF Family: HB Protein WUSCHEL, putative [Ricinus communis]
10 Hb_033312_110 0.2074992398 - - -
11 Hb_068804_060 0.2080481451 - - PREDICTED: ABC transporter G family member 17-like [Jatropha curcas]
12 Hb_007290_020 0.2080680203 - - PREDICTED: subtilisin-like protease SBT4.14 [Jatropha curcas]
13 Hb_007356_010 0.2088482457 - - CTV.19 [Citrus trifoliata]
14 Hb_163132_010 0.2095561019 - - -
15 Hb_004907_030 0.2116094429 - - hypothetical protein POPTR_0012s032802g, partial [Populus trichocarpa]
16 Hb_006794_010 0.2131222881 - - elicitor-responsive protein [Hevea brasiliensis]
17 Hb_081815_010 0.2137661456 - - PREDICTED: uncharacterized protein LOC100266863 [Vitis vinifera]
18 Hb_000291_130 0.2166561114 - - -
19 Hb_000544_170 0.224947314 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000340_330 0.2283679667 - - PREDICTED: probable indole-3-acetic acid-amido synthetase GH3.6 [Jatropha curcas]

Gene co-expression network

sample Hb_000876_010 Hb_000876_010 Hb_005723_070 Hb_005723_070 Hb_000876_010--Hb_005723_070 Hb_002450_130 Hb_002450_130 Hb_000876_010--Hb_002450_130 Hb_002972_060 Hb_002972_060 Hb_000876_010--Hb_002972_060 Hb_003025_060 Hb_003025_060 Hb_000876_010--Hb_003025_060 Hb_000130_170 Hb_000130_170 Hb_000876_010--Hb_000130_170 Hb_009119_010 Hb_009119_010 Hb_000876_010--Hb_009119_010 Hb_005723_070--Hb_000130_170 Hb_005723_070--Hb_002972_060 Hb_005723_070--Hb_002450_130 Hb_033312_110 Hb_033312_110 Hb_005723_070--Hb_033312_110 Hb_000300_140 Hb_000300_140 Hb_005723_070--Hb_000300_140 Hb_008096_020 Hb_008096_020 Hb_002450_130--Hb_008096_020 Hb_000291_130 Hb_000291_130 Hb_002450_130--Hb_000291_130 Hb_002450_130--Hb_002972_060 Hb_002450_130--Hb_000130_170 Hb_002972_060--Hb_009119_010 Hb_002972_060--Hb_008096_020 Hb_005318_010 Hb_005318_010 Hb_002972_060--Hb_005318_010 Hb_106873_020 Hb_106873_020 Hb_003025_060--Hb_106873_020 Hb_000589_230 Hb_000589_230 Hb_003025_060--Hb_000589_230 Hb_003025_060--Hb_005723_070 Hb_002126_020 Hb_002126_020 Hb_003025_060--Hb_002126_020 Hb_060054_010 Hb_060054_010 Hb_003025_060--Hb_060054_010 Hb_103093_010 Hb_103093_010 Hb_000130_170--Hb_103093_010 Hb_000340_330 Hb_000340_330 Hb_000130_170--Hb_000340_330 Hb_000130_170--Hb_005318_010 Hb_000953_120 Hb_000953_120 Hb_009119_010--Hb_000953_120 Hb_002016_030 Hb_002016_030 Hb_009119_010--Hb_002016_030 Hb_000025_080 Hb_000025_080 Hb_009119_010--Hb_000025_080 Hb_000270_540 Hb_000270_540 Hb_009119_010--Hb_000270_540 Hb_013040_010 Hb_013040_010 Hb_009119_010--Hb_013040_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.34874 0 0.687042 48.6565 5.1979 57.0453
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.71558 0.569263 0.703538 0.26767 0

CAGE analysis