Hb_000876_070

Information

Type -
Description -
Location Contig876: 58912-68828
Sequence    

Annotation

kegg
ID rcu:RCOM_1353690
description protein phosphatase 2a, regulatory subunit, putative
nr
ID XP_002519463.1
description protein phosphatase 2a, regulatory subunit, putative [Ricinus communis]
swissprot
ID O04376
description Serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' beta isoform OS=Arabidopsis thaliana GN=B'BETA PE=1 SV=1
trembl
ID B9S0E4
description Protein phosphatase 2a, regulatory subunit, putative OS=Ricinus communis GN=RCOM_1353690 PE=4 SV=1
Gene Ontology
ID GO:0000159
description serine threonine protein phosphatase 2a 57 kda regulatory subunit b beta isoform

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_61261: 58936-63014 , PASA_asmbl_61262: 63616-68745
cDNA
(Sanger)
(ID:Location)		 036_F24.ab1: 62839-63005

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000876_070 0.0 - - protein phosphatase 2a, regulatory subunit, putative [Ricinus communis]
2 Hb_002739_100 0.0373751995 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 5 isoform X1 [Jatropha curcas]
3 Hb_005779_060 0.0386777911 - - PREDICTED: uncharacterized protein LOC105643212 isoform X2 [Jatropha curcas]
4 Hb_002046_180 0.0508805946 - - PREDICTED: uncharacterized protein LOC105641295 [Jatropha curcas]
5 Hb_032202_190 0.0534583847 - - PREDICTED: probable xyloglucan endotransglucosylase/hydrolase protein 21 [Gossypium raimondii]
6 Hb_007691_030 0.0545249029 desease resistance Gene Name: AAA PREDICTED: ATPase family AAA domain-containing protein 1-B [Jatropha curcas]
7 Hb_005618_170 0.0555118887 - - PREDICTED: protein transport protein SEC23 [Jatropha curcas]
8 Hb_000062_220 0.0573598823 - - BnaC02g35870D [Brassica napus]
9 Hb_004254_120 0.0583921574 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000928_210 0.0587209867 - - PREDICTED: uncharacterized protein LOC105632512 isoform X1 [Jatropha curcas]
11 Hb_001242_060 0.0595206142 - - PREDICTED: uncharacterized protein LOC105139508 [Populus euphratica]
12 Hb_005305_080 0.0609754112 - - PREDICTED: heterogeneous nuclear ribonucleoprotein H3 isoform X1 [Jatropha curcas]
13 Hb_008725_260 0.0626047953 - - PREDICTED: uncharacterized protein LOC105642597 [Jatropha curcas]
14 Hb_029866_090 0.0640125402 - - PREDICTED: uncharacterized protein LOC105648377 [Jatropha curcas]
15 Hb_002110_150 0.0647006516 - - PREDICTED: serine/threonine-protein kinase PEPKR2 [Jatropha curcas]
16 Hb_000003_250 0.064794091 - - glycerol-3-phosphate dehydrogenase, putative [Ricinus communis]
17 Hb_003092_040 0.0648081717 - - PREDICTED: calmodulin-binding receptor-like cytoplasmic kinase 3 isoform X2 [Pyrus x bretschneideri]
18 Hb_012019_010 0.0654946392 - - PREDICTED: F-box/kelch-repeat protein SKIP30 [Jatropha curcas]
19 Hb_031527_040 0.0664811047 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 5 isoform X1 [Jatropha curcas]
20 Hb_002105_040 0.0665566936 - - -

Gene co-expression network

sample Hb_000876_070 Hb_000876_070 Hb_002739_100 Hb_002739_100 Hb_000876_070--Hb_002739_100 Hb_005779_060 Hb_005779_060 Hb_000876_070--Hb_005779_060 Hb_002046_180 Hb_002046_180 Hb_000876_070--Hb_002046_180 Hb_032202_190 Hb_032202_190 Hb_000876_070--Hb_032202_190 Hb_007691_030 Hb_007691_030 Hb_000876_070--Hb_007691_030 Hb_005618_170 Hb_005618_170 Hb_000876_070--Hb_005618_170 Hb_002739_100--Hb_005779_060 Hb_002739_100--Hb_007691_030 Hb_001242_060 Hb_001242_060 Hb_002739_100--Hb_001242_060 Hb_000928_210 Hb_000928_210 Hb_002739_100--Hb_000928_210 Hb_031527_040 Hb_031527_040 Hb_002739_100--Hb_031527_040 Hb_000016_250 Hb_000016_250 Hb_005779_060--Hb_000016_250 Hb_005779_060--Hb_002046_180 Hb_000062_220 Hb_000062_220 Hb_005779_060--Hb_000062_220 Hb_002110_150 Hb_002110_150 Hb_005779_060--Hb_002110_150 Hb_012019_010 Hb_012019_010 Hb_002046_180--Hb_012019_010 Hb_002046_180--Hb_002110_150 Hb_008725_260 Hb_008725_260 Hb_002046_180--Hb_008725_260 Hb_005463_100 Hb_005463_100 Hb_002046_180--Hb_005463_100 Hb_005663_060 Hb_005663_060 Hb_032202_190--Hb_005663_060 Hb_004254_120 Hb_004254_120 Hb_032202_190--Hb_004254_120 Hb_032202_190--Hb_005618_170 Hb_005305_080 Hb_005305_080 Hb_032202_190--Hb_005305_080 Hb_032202_190--Hb_007691_030 Hb_003428_030 Hb_003428_030 Hb_007691_030--Hb_003428_030 Hb_005144_160 Hb_005144_160 Hb_007691_030--Hb_005144_160 Hb_003092_040 Hb_003092_040 Hb_007691_030--Hb_003092_040 Hb_000580_180 Hb_000580_180 Hb_007691_030--Hb_000580_180 Hb_005618_170--Hb_005305_080 Hb_005618_170--Hb_004254_120 Hb_007416_320 Hb_007416_320 Hb_005618_170--Hb_007416_320 Hb_000085_050 Hb_000085_050 Hb_005618_170--Hb_000085_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
24.0363 18.8626 13.2225 18.0621 22.7405 24.5859
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
29.1768 35.4491 35.4497 16.7806 16.2707

CAGE analysis