Hb_000877_060

Information

Type -
Description -
Location Contig877: 83995-85233
Sequence    

Annotation

kegg
ID pop:POPTR_0002s22050g
description POPTRDRAFT_1072766; hypothetical protein
nr
ID XP_002301588.1
description hypothetical protein POPTR_0002s22050g [Populus trichocarpa]
swissprot
ID Q9SFC7
description F-box protein At3g07870 OS=Arabidopsis thaliana GN=At3g07870 PE=2 SV=1
trembl
ID B9GTQ9
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0002s22050g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000877_060 0.0 - - hypothetical protein POPTR_0002s22050g [Populus trichocarpa]
2 Hb_004221_010 0.0765215049 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 19-like [Jatropha curcas]
3 Hb_012022_030 0.0769071497 transcription factor TF Family: Alfin-like phd/F-box containing protein, putative [Ricinus communis]
4 Hb_001248_050 0.0785361713 - - PREDICTED: PXMP2/4 family protein 4-like [Jatropha curcas]
5 Hb_011828_020 0.0797219994 transcription factor TF Family: NF-YB PREDICTED: nuclear transcription factor Y subunit B-10-like isoform X2 [Jatropha curcas]
6 Hb_000720_120 0.0812619349 - - PREDICTED: general transcription factor IIE subunit 2-like [Jatropha curcas]
7 Hb_002762_060 0.0832340983 - - PREDICTED: diphthine methyltransferase homolog [Jatropha curcas]
8 Hb_004920_040 0.0848871535 - - PREDICTED: probable dimethyladenosine transferase [Jatropha curcas]
9 Hb_001477_130 0.0854775571 - - PREDICTED: uncharacterized protein LOC105646871 [Jatropha curcas]
10 Hb_012052_060 0.0865011573 - - hypothetical protein POPTR_0018s10190g [Populus trichocarpa]
11 Hb_000638_080 0.08827544 - - PREDICTED: uncharacterized protein LOC105632765 [Jatropha curcas]
12 Hb_000395_080 0.0892425278 - - PREDICTED: uncharacterized protein LOC105645573 isoform X1 [Jatropha curcas]
13 Hb_003020_230 0.0902395671 - - DNA-directed RNA polymerase II subunit RPB7 [Glycine max]
14 Hb_000613_140 0.0904360325 - - PREDICTED: indole-3-glycerol phosphate synthase, chloroplastic [Jatropha curcas]
15 Hb_000371_080 0.0915445296 - - ubiquitin-conjugating enzyme m, putative [Ricinus communis]
16 Hb_000522_080 0.0959531874 - - PREDICTED: uncharacterized protein LOC105632108 [Jatropha curcas]
17 Hb_003086_020 0.0960545887 - - hypothetical protein JCGZ_06091 [Jatropha curcas]
18 Hb_158092_070 0.0981692957 - - PREDICTED: cytochrome b-c1 complex subunit Rieske-4, mitochondrial-like [Jatropha curcas]
19 Hb_004223_280 0.0990256578 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 6 [Jatropha curcas]
20 Hb_157854_010 0.0995202453 - - PREDICTED: myb family transcription factor APL-like [Jatropha curcas]

Gene co-expression network

sample Hb_000877_060 Hb_000877_060 Hb_004221_010 Hb_004221_010 Hb_000877_060--Hb_004221_010 Hb_012022_030 Hb_012022_030 Hb_000877_060--Hb_012022_030 Hb_001248_050 Hb_001248_050 Hb_000877_060--Hb_001248_050 Hb_011828_020 Hb_011828_020 Hb_000877_060--Hb_011828_020 Hb_000720_120 Hb_000720_120 Hb_000877_060--Hb_000720_120 Hb_002762_060 Hb_002762_060 Hb_000877_060--Hb_002762_060 Hb_158092_070 Hb_158092_070 Hb_004221_010--Hb_158092_070 Hb_004221_010--Hb_002762_060 Hb_004055_010 Hb_004055_010 Hb_004221_010--Hb_004055_010 Hb_004221_010--Hb_001248_050 Hb_000032_570 Hb_000032_570 Hb_004221_010--Hb_000032_570 Hb_039946_020 Hb_039946_020 Hb_012022_030--Hb_039946_020 Hb_002137_020 Hb_002137_020 Hb_012022_030--Hb_002137_020 Hb_004223_280 Hb_004223_280 Hb_012022_030--Hb_004223_280 Hb_000613_140 Hb_000613_140 Hb_012022_030--Hb_000613_140 Hb_000571_120 Hb_000571_120 Hb_012022_030--Hb_000571_120 Hb_000085_270 Hb_000085_270 Hb_001248_050--Hb_000085_270 Hb_001138_050 Hb_001138_050 Hb_001248_050--Hb_001138_050 Hb_004109_200 Hb_004109_200 Hb_001248_050--Hb_004109_200 Hb_000483_350 Hb_000483_350 Hb_001248_050--Hb_000483_350 Hb_000395_080 Hb_000395_080 Hb_011828_020--Hb_000395_080 Hb_001477_130 Hb_001477_130 Hb_011828_020--Hb_001477_130 Hb_003020_230 Hb_003020_230 Hb_011828_020--Hb_003020_230 Hb_011828_020--Hb_000613_140 Hb_000923_050 Hb_000923_050 Hb_011828_020--Hb_000923_050 Hb_000169_010 Hb_000169_010 Hb_000720_120--Hb_000169_010 Hb_000720_120--Hb_001138_050 Hb_003392_040 Hb_003392_040 Hb_000720_120--Hb_003392_040 Hb_000720_120--Hb_000613_140 Hb_000638_080 Hb_000638_080 Hb_000720_120--Hb_000638_080 Hb_000720_120--Hb_000032_570 Hb_157854_010 Hb_157854_010 Hb_002762_060--Hb_157854_010 Hb_024835_030 Hb_024835_030 Hb_002762_060--Hb_024835_030 Hb_004920_040 Hb_004920_040 Hb_002762_060--Hb_004920_040 Hb_002762_060--Hb_000720_120 Hb_002762_060--Hb_158092_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
18.137 8.63849 3.2656 3.46967 11.1071 18.3049
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
25.6571 18.9232 14.1379 12.4709 2.61117

CAGE analysis