Hb_000877_080

Information

Type -
Description -
Location Contig877: 105619-110641
Sequence    

Annotation

kegg
ID rcu:RCOM_0549380
description hypothetical protein
nr
ID XP_012080698.1
description PREDICTED: uncharacterized protein LOC105640901 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067K3Q5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13799 PE=4 SV=1
Gene Ontology
ID GO:0009965
description ptb domain-containing engulfment adapter protein 1 isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_61273: 105765-110491 , PASA_asmbl_61274: 105846-110524 , PASA_asmbl_61275: 105912-110397
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000877_080 0.0 - - PREDICTED: uncharacterized protein LOC105640901 [Jatropha curcas]
2 Hb_001056_030 0.092001772 - - PREDICTED: probable inactive purple acid phosphatase 16 isoform X2 [Jatropha curcas]
3 Hb_001712_020 0.0941391855 - - PREDICTED: uncharacterized protein LOC105641948 [Jatropha curcas]
4 Hb_007827_010 0.1014263287 - - PREDICTED: uncharacterized protein C12B10.15c [Jatropha curcas]
5 Hb_001318_260 0.1071273746 - - PREDICTED: nitrogen regulatory protein P-II homolog [Jatropha curcas]
6 Hb_002872_050 0.1092548201 - - PREDICTED: thioredoxin-like 3-2, chloroplastic [Jatropha curcas]
7 Hb_003349_030 0.1093329586 - - PREDICTED: uncharacterized protein LOC105628283 [Jatropha curcas]
8 Hb_006846_150 0.1129220892 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000394_180 0.1134288377 - - PREDICTED: uncharacterized protein LOC105636995 [Jatropha curcas]
10 Hb_018133_020 0.1137341906 - - transporter, putative [Ricinus communis]
11 Hb_000160_180 0.1152277927 - - methionyl-tRNA formyltransferase, putative [Ricinus communis]
12 Hb_000487_260 0.1154471482 - - PREDICTED: protein Iojap, chloroplastic [Jatropha curcas]
13 Hb_011689_120 0.1156190602 - - PREDICTED: uncharacterized protein At4g15545 [Jatropha curcas]
14 Hb_000403_070 0.1187882718 - - PREDICTED: iron-sulfur assembly protein IscA, chloroplastic isoform X1 [Jatropha curcas]
15 Hb_011330_020 0.1198767044 transcription factor TF Family: ARID transcription factor, putative [Ricinus communis]
16 Hb_131181_010 0.1210169685 - - transcription initiation factor iia (tfiia), gamma chain, putative [Ricinus communis]
17 Hb_001301_340 0.1233113895 - - endoribonuclease L-PSP family protein [Populus trichocarpa]
18 Hb_001279_080 0.1242815795 transcription factor TF Family: C2H2 PREDICTED: uncharacterized protein LOC105140180 isoform X1 [Populus euphratica]
19 Hb_001240_010 0.1244896937 - - PREDICTED: uncharacterized protein LOC105634101 [Jatropha curcas]
20 Hb_002609_200 0.1252467812 - - PREDICTED: anthranilate synthase alpha subunit 2, chloroplastic isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_000877_080 Hb_000877_080 Hb_001056_030 Hb_001056_030 Hb_000877_080--Hb_001056_030 Hb_001712_020 Hb_001712_020 Hb_000877_080--Hb_001712_020 Hb_007827_010 Hb_007827_010 Hb_000877_080--Hb_007827_010 Hb_001318_260 Hb_001318_260 Hb_000877_080--Hb_001318_260 Hb_002872_050 Hb_002872_050 Hb_000877_080--Hb_002872_050 Hb_003349_030 Hb_003349_030 Hb_000877_080--Hb_003349_030 Hb_011330_020 Hb_011330_020 Hb_001056_030--Hb_011330_020 Hb_000429_040 Hb_000429_040 Hb_001056_030--Hb_000429_040 Hb_000394_180 Hb_000394_180 Hb_001056_030--Hb_000394_180 Hb_002972_010 Hb_002972_010 Hb_001056_030--Hb_002972_010 Hb_000413_240 Hb_000413_240 Hb_001056_030--Hb_000413_240 Hb_005846_030 Hb_005846_030 Hb_001712_020--Hb_005846_030 Hb_011689_120 Hb_011689_120 Hb_001712_020--Hb_011689_120 Hb_006846_150 Hb_006846_150 Hb_001712_020--Hb_006846_150 Hb_014834_130 Hb_014834_130 Hb_001712_020--Hb_014834_130 Hb_000317_260 Hb_000317_260 Hb_001712_020--Hb_000317_260 Hb_002609_200 Hb_002609_200 Hb_007827_010--Hb_002609_200 Hb_001279_080 Hb_001279_080 Hb_007827_010--Hb_001279_080 Hb_007827_010--Hb_002872_050 Hb_000107_150 Hb_000107_150 Hb_007827_010--Hb_000107_150 Hb_000431_070 Hb_000431_070 Hb_007827_010--Hb_000431_070 Hb_000035_270 Hb_000035_270 Hb_007827_010--Hb_000035_270 Hb_018133_020 Hb_018133_020 Hb_001318_260--Hb_018133_020 Hb_131181_010 Hb_131181_010 Hb_001318_260--Hb_131181_010 Hb_001318_260--Hb_001279_080 Hb_002540_080 Hb_002540_080 Hb_001318_260--Hb_002540_080 Hb_001318_260--Hb_002872_050 Hb_000160_180 Hb_000160_180 Hb_001318_260--Hb_000160_180 Hb_003050_280 Hb_003050_280 Hb_002872_050--Hb_003050_280 Hb_000056_070 Hb_000056_070 Hb_002872_050--Hb_000056_070 Hb_002872_050--Hb_000107_150 Hb_002872_050--Hb_011689_120 Hb_001790_030 Hb_001790_030 Hb_003349_030--Hb_001790_030 Hb_003349_030--Hb_000056_070 Hb_003050_250 Hb_003050_250 Hb_003349_030--Hb_003050_250 Hb_003349_030--Hb_001712_020 Hb_001019_150 Hb_001019_150 Hb_003349_030--Hb_001019_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.1344 2.8605 10.7029 7.98639 3.53686 3.88971
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
11.4107 18.1535 5.19669 2.93494 13.224

CAGE analysis