Hb_000878_010

Information

Type -
Description -
Location Contig878: 42357-45464
Sequence    

Annotation

kegg
ID rcu:RCOM_0422050
description pentatricopeptide repeat-containing protein, putative
nr
ID XP_012074270.1
description PREDICTED: putative pentatricopeptide repeat-containing protein At5g06400, mitochondrial [Jatropha curcas]
swissprot
ID Q9FNG8
description Putative pentatricopeptide repeat-containing protein At5g06400, mitochondrial OS=Arabidopsis thaliana GN=At5g06400 PE=3 SV=1
trembl
ID A0A067KIM5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08725 PE=4 SV=1
Gene Ontology
ID GO:0005515
description pentatricopeptide repeat-containing protein mitochondrial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000878_010 0.0 - - PREDICTED: putative pentatricopeptide repeat-containing protein At5g06400, mitochondrial [Jatropha curcas]
2 Hb_001700_040 0.0738884775 - - PREDICTED: H/ACA ribonucleoprotein complex non-core subunit NAF1 [Jatropha curcas]
3 Hb_004724_060 0.0823240211 - - PREDICTED: uncharacterized protein LOC105640155 isoform X1 [Jatropha curcas]
4 Hb_000313_060 0.0849552816 - - hypothetical protein [Beta vulgaris subsp. vulgaris]
5 Hb_001322_210 0.0868650347 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH6-like [Jatropha curcas]
6 Hb_003938_080 0.0886645352 - - PREDICTED: uncharacterized protein LOC105644554 [Jatropha curcas]
7 Hb_011318_010 0.0894758837 - - PREDICTED: peroxisome biogenesis protein 5 [Jatropha curcas]
8 Hb_004619_050 0.0899412259 - - PREDICTED: phosphatidylinositol 4-phosphate 5-kinase 8-like isoform X2 [Jatropha curcas]
9 Hb_010417_050 0.0927665422 - - PREDICTED: uncharacterized protein LOC105645746 [Jatropha curcas]
10 Hb_001797_050 0.0928737345 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 3-like isoform X1 [Jatropha curcas]
11 Hb_005679_050 0.0930989999 - - ABC transporter family protein [Hevea brasiliensis]
12 Hb_001439_140 0.0941397201 - - pattern formation protein, putative [Ricinus communis]
13 Hb_000005_380 0.0941411787 - - PREDICTED: uncharacterized protein LOC105634023 isoform X1 [Jatropha curcas]
14 Hb_000577_010 0.0942838764 - - hypothetical protein JCGZ_23887 [Jatropha curcas]
15 Hb_009411_010 0.0950883624 - - PREDICTED: uncharacterized protein LOC105645272 [Jatropha curcas]
16 Hb_003216_080 0.0967663894 - - PREDICTED: pentatricopeptide repeat-containing protein At5g65560-like [Jatropha curcas]
17 Hb_007586_030 0.0970217683 - - PREDICTED: pentatricopeptide repeat-containing protein At2g15690-like isoform X1 [Jatropha curcas]
18 Hb_003544_100 0.0983164501 - - PREDICTED: putative pentatricopeptide repeat-containing protein At5g59900 [Jatropha curcas]
19 Hb_017075_010 0.0990916777 transcription factor TF Family: SNF2 PREDICTED: putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 1 [Jatropha curcas]
20 Hb_000627_080 0.0995372048 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 48-like [Jatropha curcas]

Gene co-expression network

sample Hb_000878_010 Hb_000878_010 Hb_001700_040 Hb_001700_040 Hb_000878_010--Hb_001700_040 Hb_004724_060 Hb_004724_060 Hb_000878_010--Hb_004724_060 Hb_000313_060 Hb_000313_060 Hb_000878_010--Hb_000313_060 Hb_001322_210 Hb_001322_210 Hb_000878_010--Hb_001322_210 Hb_003938_080 Hb_003938_080 Hb_000878_010--Hb_003938_080 Hb_011318_010 Hb_011318_010 Hb_000878_010--Hb_011318_010 Hb_000457_260 Hb_000457_260 Hb_001700_040--Hb_000457_260 Hb_000318_510 Hb_000318_510 Hb_001700_040--Hb_000318_510 Hb_000283_070 Hb_000283_070 Hb_001700_040--Hb_000283_070 Hb_005679_050 Hb_005679_050 Hb_001700_040--Hb_005679_050 Hb_000101_240 Hb_000101_240 Hb_001700_040--Hb_000101_240 Hb_001797_050 Hb_001797_050 Hb_004724_060--Hb_001797_050 Hb_000577_010 Hb_000577_010 Hb_004724_060--Hb_000577_010 Hb_007163_090 Hb_007163_090 Hb_004724_060--Hb_007163_090 Hb_000820_170 Hb_000820_170 Hb_004724_060--Hb_000820_170 Hb_008500_010 Hb_008500_010 Hb_004724_060--Hb_008500_010 Hb_123352_020 Hb_123352_020 Hb_004724_060--Hb_123352_020 Hb_001930_010 Hb_001930_010 Hb_000313_060--Hb_001930_010 Hb_001439_140 Hb_001439_140 Hb_000313_060--Hb_001439_140 Hb_124315_020 Hb_124315_020 Hb_000313_060--Hb_124315_020 Hb_000514_060 Hb_000514_060 Hb_000313_060--Hb_000514_060 Hb_000390_070 Hb_000390_070 Hb_000313_060--Hb_000390_070 Hb_000780_220 Hb_000780_220 Hb_001322_210--Hb_000780_220 Hb_002291_070 Hb_002291_070 Hb_001322_210--Hb_002291_070 Hb_003216_080 Hb_003216_080 Hb_001322_210--Hb_003216_080 Hb_002471_210 Hb_002471_210 Hb_001322_210--Hb_002471_210 Hb_000347_130 Hb_000347_130 Hb_001322_210--Hb_000347_130 Hb_007849_020 Hb_007849_020 Hb_001322_210--Hb_007849_020 Hb_009411_010 Hb_009411_010 Hb_003938_080--Hb_009411_010 Hb_003938_080--Hb_003216_080 Hb_003544_100 Hb_003544_100 Hb_003938_080--Hb_003544_100 Hb_003938_080--Hb_000101_240 Hb_015884_030 Hb_015884_030 Hb_003938_080--Hb_015884_030 Hb_000502_050 Hb_000502_050 Hb_003938_080--Hb_000502_050 Hb_004452_100 Hb_004452_100 Hb_011318_010--Hb_004452_100 Hb_000005_380 Hb_000005_380 Hb_011318_010--Hb_000005_380 Hb_002798_040 Hb_002798_040 Hb_011318_010--Hb_002798_040 Hb_090804_010 Hb_090804_010 Hb_011318_010--Hb_090804_010 Hb_000244_250 Hb_000244_250 Hb_011318_010--Hb_000244_250 Hb_002054_040 Hb_002054_040 Hb_011318_010--Hb_002054_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.993782 0.905542 0.313853 0.294718 0.9623 1.90204
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.670946 0.45099 1.15796 0.872383 0.774965

CAGE analysis