Hb_000878_040

Information

Type -
Description -
Location Contig878: 58360-63424
Sequence    

Annotation

kegg
ID rcu:RCOM_0422090
description hypothetical protein
nr
ID XP_012074268.1
description PREDICTED: uncharacterized protein LOC105635780 isoform X1 [Jatropha curcas]
swissprot
ID Q84ZT9
description Protein WAVE-DAMPENED 2 OS=Arabidopsis thaliana GN=WVD2 PE=2 SV=1
trembl
ID A0A067KW54
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08723 PE=4 SV=1
Gene Ontology
ID GO:0044238
description tpx2 family isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_61296: 58414-63416
cDNA
(Sanger)
(ID:Location)		 010_P10.ab1: 58538-60294 , 042_J08.ab1: 58538-60740

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000878_040 0.0 - - PREDICTED: uncharacterized protein LOC105635780 isoform X1 [Jatropha curcas]
2 Hb_002475_050 0.1145431895 - - hypothetical protein JCGZ_22540 [Jatropha curcas]
3 Hb_003216_110 0.122356683 - - PREDICTED: vacuolar protein-sorting-associated protein 11 homolog [Jatropha curcas]
4 Hb_001268_210 0.1254423465 - - zinc finger protein, putative [Ricinus communis]
5 Hb_002837_070 0.1259082799 - - PREDICTED: phosphatidylinositol 4-phosphate 5-kinase 8-like isoform X1 [Jatropha curcas]
6 Hb_002986_050 0.1286383392 transcription factor TF Family: B3 PREDICTED: B3 domain-containing protein Os01g0234100-like [Jatropha curcas]
7 Hb_002739_080 0.1327445542 - - cystathionine beta-lyase, putative [Ricinus communis]
8 Hb_061256_030 0.1386046223 - - receptor serine-threonine protein kinase, putative [Ricinus communis]
9 Hb_000372_040 0.1416308496 - - WD-repeat protein, putative [Ricinus communis]
10 Hb_009421_100 0.1434524694 transcription factor TF Family: B3 PREDICTED: B3 domain-containing protein Os01g0234100-like [Jatropha curcas]
11 Hb_001408_090 0.1460092508 - - PREDICTED: uncharacterized protein LOC105629659 [Jatropha curcas]
12 Hb_079326_010 0.14748589 - - PREDICTED: uncharacterized protein LOC105630719 isoform X1 [Jatropha curcas]
13 Hb_001195_110 0.1509568699 transcription factor TF Family: TUB phosphoric diester hydrolase, putative [Ricinus communis]
14 Hb_174865_050 0.1519708876 - - PREDICTED: neuroguidin [Jatropha curcas]
15 Hb_000248_050 0.1530062474 - - PREDICTED: uncharacterized protein LOC105647198 isoform X3 [Jatropha curcas]
16 Hb_005028_010 0.1534203041 - - interferon-induced guanylate-binding protein, putative [Ricinus communis]
17 Hb_001825_010 0.1546738649 - - PREDICTED: bet1-like SNARE 1-1 [Jatropha curcas]
18 Hb_012977_010 0.1548660907 - - PREDICTED: uncharacterized protein LOC105131558 [Populus euphratica]
19 Hb_000365_350 0.155235246 - - PREDICTED: uncharacterized protein LOC105649068 [Jatropha curcas]
20 Hb_004449_220 0.155820109 transcription factor TF Family: C2H2 PREDICTED: uncharacterized zinc finger protein At4g06634 [Jatropha curcas]

Gene co-expression network

sample Hb_000878_040 Hb_000878_040 Hb_002475_050 Hb_002475_050 Hb_000878_040--Hb_002475_050 Hb_003216_110 Hb_003216_110 Hb_000878_040--Hb_003216_110 Hb_001268_210 Hb_001268_210 Hb_000878_040--Hb_001268_210 Hb_002837_070 Hb_002837_070 Hb_000878_040--Hb_002837_070 Hb_002986_050 Hb_002986_050 Hb_000878_040--Hb_002986_050 Hb_002739_080 Hb_002739_080 Hb_000878_040--Hb_002739_080 Hb_000372_040 Hb_000372_040 Hb_002475_050--Hb_000372_040 Hb_079326_010 Hb_079326_010 Hb_002475_050--Hb_079326_010 Hb_002475_050--Hb_002986_050 Hb_004881_050 Hb_004881_050 Hb_002475_050--Hb_004881_050 Hb_002475_050--Hb_002739_080 Hb_005000_270 Hb_005000_270 Hb_002475_050--Hb_005000_270 Hb_000230_370 Hb_000230_370 Hb_003216_110--Hb_000230_370 Hb_001408_090 Hb_001408_090 Hb_003216_110--Hb_001408_090 Hb_002025_140 Hb_002025_140 Hb_003216_110--Hb_002025_140 Hb_001969_040 Hb_001969_040 Hb_003216_110--Hb_001969_040 Hb_005028_010 Hb_005028_010 Hb_003216_110--Hb_005028_010 Hb_003216_110--Hb_002986_050 Hb_001268_210--Hb_003216_110 Hb_002027_220 Hb_002027_220 Hb_001268_210--Hb_002027_220 Hb_004143_070 Hb_004143_070 Hb_001268_210--Hb_004143_070 Hb_000165_130 Hb_000165_130 Hb_001268_210--Hb_000165_130 Hb_000197_210 Hb_000197_210 Hb_001268_210--Hb_000197_210 Hb_001268_210--Hb_002475_050 Hb_061256_030 Hb_061256_030 Hb_002837_070--Hb_061256_030 Hb_113216_010 Hb_113216_010 Hb_002837_070--Hb_113216_010 Hb_010189_010 Hb_010189_010 Hb_002837_070--Hb_010189_010 Hb_174865_050 Hb_174865_050 Hb_002837_070--Hb_174865_050 Hb_000212_280 Hb_000212_280 Hb_002837_070--Hb_000212_280 Hb_000211_090 Hb_000211_090 Hb_002837_070--Hb_000211_090 Hb_002986_050--Hb_000212_280 Hb_000732_020 Hb_000732_020 Hb_002986_050--Hb_000732_020 Hb_002986_050--Hb_000372_040 Hb_002986_050--Hb_005000_270 Hb_002739_080--Hb_000372_040 Hb_002739_080--Hb_003216_110 Hb_002048_090 Hb_002048_090 Hb_002739_080--Hb_002048_090 Hb_002739_080--Hb_079326_010 Hb_002159_040 Hb_002159_040 Hb_002739_080--Hb_002159_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
411.262 40.7418 51.9335 55.8846 190.971 426.431
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
133.011 30.5967 113.579 38.6574 26.8599

CAGE analysis