Hb_000878_050

Information

Type -
Description -
Location Contig878: 67691-70360
Sequence    

Annotation

kegg
ID rcu:RCOM_0422200
description hypothetical protein
nr
ID XP_012074266.1
description PREDICTED: fasciclin-like arabinogalactan protein 17 [Jatropha curcas]
swissprot
ID Q66GR0
description Fasciclin-like arabinogalactan protein 17 OS=Arabidopsis thaliana GN=FLA17 PE=2 SV=1
trembl
ID A0A067KM42
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08722 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_61298: 67690-70505 , PASA_asmbl_61299: 68177-68673 , PASA_asmbl_61300: 68731-68927
cDNA
(Sanger)
(ID:Location)		 004_A01.ab1: 69643-70437

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000878_050 0.0 - - PREDICTED: fasciclin-like arabinogalactan protein 17 [Jatropha curcas]
2 Hb_004435_020 0.0606235916 - - PREDICTED: tubulin alpha-2 chain [Jatropha curcas]
3 Hb_005542_120 0.0608257777 - - PREDICTED: probably inactive leucine-rich repeat receptor-like protein kinase At3g28040 [Jatropha curcas]
4 Hb_000392_110 0.0725331937 transcription factor TF Family: MYB r2r3-myb transcription factor, putative [Ricinus communis]
5 Hb_000003_280 0.0750490799 - - conserved hypothetical protein [Ricinus communis]
6 Hb_004223_060 0.075737718 - - PREDICTED: WEB family protein At1g75720 [Jatropha curcas]
7 Hb_007904_280 0.0774848288 - - PREDICTED: uncharacterized protein LOC105644987 [Jatropha curcas]
8 Hb_001544_090 0.0795202174 - - chloroplast-targeted copper chaperone, putative [Ricinus communis]
9 Hb_000032_420 0.0805542244 - - PREDICTED: GDSL esterase/lipase At4g10955 [Jatropha curcas]
10 Hb_011918_070 0.0807476116 - - PREDICTED: probable inactive receptor kinase At1g48480 [Jatropha curcas]
11 Hb_005976_110 0.0814529614 - - PREDICTED: uncharacterized protein LOC105639708 [Jatropha curcas]
12 Hb_000103_450 0.0831658502 - - PREDICTED: dentin sialophosphoprotein-like [Jatropha curcas]
13 Hb_007811_020 0.0843398111 - - PREDICTED: expansin-A6 [Jatropha curcas]
14 Hb_001117_050 0.0850616449 - - E3 ubiquitin-protein ligase UPL5 [Theobroma cacao]
15 Hb_001095_020 0.0854280377 - - PREDICTED: F-box protein At2g26850-like [Jatropha curcas]
16 Hb_010407_130 0.0899712864 - - hypothetical protein POPTR_0008s16680g [Populus trichocarpa]
17 Hb_001674_010 0.0917879246 - - PREDICTED: reticulon-like protein B21 isoform X1 [Populus euphratica]
18 Hb_001159_230 0.0926344613 - - Kinesin heavy chain, putative [Ricinus communis]
19 Hb_000077_280 0.0955244656 - - ankyrin repeat-containing protein, putative [Ricinus communis]
20 Hb_053264_010 0.0957663246 - - beta glucosidase [Hevea brasiliensis]

Gene co-expression network

sample Hb_000878_050 Hb_000878_050 Hb_004435_020 Hb_004435_020 Hb_000878_050--Hb_004435_020 Hb_005542_120 Hb_005542_120 Hb_000878_050--Hb_005542_120 Hb_000392_110 Hb_000392_110 Hb_000878_050--Hb_000392_110 Hb_000003_280 Hb_000003_280 Hb_000878_050--Hb_000003_280 Hb_004223_060 Hb_004223_060 Hb_000878_050--Hb_004223_060 Hb_007904_280 Hb_007904_280 Hb_000878_050--Hb_007904_280 Hb_005976_110 Hb_005976_110 Hb_004435_020--Hb_005976_110 Hb_010407_130 Hb_010407_130 Hb_004435_020--Hb_010407_130 Hb_000103_450 Hb_000103_450 Hb_004435_020--Hb_000103_450 Hb_001095_020 Hb_001095_020 Hb_004435_020--Hb_001095_020 Hb_007811_020 Hb_007811_020 Hb_004435_020--Hb_007811_020 Hb_001117_050 Hb_001117_050 Hb_005542_120--Hb_001117_050 Hb_011918_070 Hb_011918_070 Hb_005542_120--Hb_011918_070 Hb_005542_120--Hb_000392_110 Hb_001396_030 Hb_001396_030 Hb_005542_120--Hb_001396_030 Hb_005542_120--Hb_000003_280 Hb_004202_020 Hb_004202_020 Hb_000392_110--Hb_004202_020 Hb_000483_450 Hb_000483_450 Hb_000392_110--Hb_000483_450 Hb_000392_110--Hb_001117_050 Hb_003894_110 Hb_003894_110 Hb_000392_110--Hb_003894_110 Hb_001047_090 Hb_001047_090 Hb_000392_110--Hb_001047_090 Hb_010962_020 Hb_010962_020 Hb_000003_280--Hb_010962_020 Hb_053264_010 Hb_053264_010 Hb_000003_280--Hb_053264_010 Hb_000003_280--Hb_000103_450 Hb_001898_040 Hb_001898_040 Hb_000003_280--Hb_001898_040 Hb_006846_040 Hb_006846_040 Hb_000003_280--Hb_006846_040 Hb_004223_060--Hb_007904_280 Hb_000077_280 Hb_000077_280 Hb_004223_060--Hb_000077_280 Hb_000003_370 Hb_000003_370 Hb_004223_060--Hb_000003_370 Hb_004223_060--Hb_000103_450 Hb_004223_060--Hb_000392_110 Hb_012132_050 Hb_012132_050 Hb_007904_280--Hb_012132_050 Hb_009783_010 Hb_009783_010 Hb_007904_280--Hb_009783_010 Hb_001136_160 Hb_001136_160 Hb_007904_280--Hb_001136_160 Hb_000012_350 Hb_000012_350 Hb_007904_280--Hb_000012_350
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.56927 18.4198 111.889 188.739 1.32129 0.474977
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.4927 0.364832 0.214716 10.3852 90.2994

CAGE analysis