Hb_000878_090

Information

Type -
Description -
Location Contig878: 113401-115641
Sequence    

Annotation

kegg
ID pop:POPTR_0006s21420g
description POPTRDRAFT_561178; sucrose-phosphatase family protein
nr
ID XP_002309266.1
description sucrose-phosphatase family protein [Populus trichocarpa]
swissprot
ID Q5IH13
description Sucrose-phosphatase 2 OS=Nicotiana tabacum GN=SPP2 PE=2 SV=1
trembl
ID B9H9N0
description Sucrose-phosphatase family protein OS=Populus trichocarpa GN=POPTR_0006s21420g PE=4 SV=1
Gene Ontology
ID GO:0050307
description sucrose-phosphatase family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_61304: 115088-116580
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000878_090 0.0 - - sucrose-phosphatase family protein [Populus trichocarpa]
2 Hb_009907_020 0.0747840799 - - hypothetical protein CICLE_v10009323mg [Citrus clementina]
3 Hb_001160_050 0.0763574668 - - PREDICTED: long-chain-alcohol oxidase FAO1 [Jatropha curcas]
4 Hb_008749_010 0.0895128666 - - PREDICTED: auxin efflux carrier component 3-like [Jatropha curcas]
5 Hb_002374_030 0.0941000092 - - PREDICTED: probable receptor-like protein kinase At1g11050 isoform X1 [Jatropha curcas]
6 Hb_004040_010 0.0944083517 - - hypothetical protein POPTR_0019s14250g [Populus trichocarpa]
7 Hb_000152_410 0.0951082789 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At5g10290 [Jatropha curcas]
8 Hb_000199_040 0.0996167284 desease resistance Gene Name: TIR PREDICTED: TMV resistance protein N-like isoform X1 [Jatropha curcas]
9 Hb_000002_370 0.1064693533 - - PREDICTED: uncharacterized protein LOC105632103 [Jatropha curcas]
10 Hb_008406_070 0.1088380277 - - PREDICTED: probable protein phosphatase 2C 58 [Jatropha curcas]
11 Hb_189208_060 0.1095117656 - - PREDICTED: two-pore potassium channel 5 [Jatropha curcas]
12 Hb_011794_050 0.1127569452 - - transcription factor, putative [Ricinus communis]
13 Hb_000319_010 0.1131271643 - - hypothetical protein POPTR_0016s03600g [Populus trichocarpa]
14 Hb_000032_090 0.1152741427 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000836_420 0.1185997382 transcription factor TF Family: WRKY WRKY transcription factor, putative [Ricinus communis]
16 Hb_009476_070 0.1196370691 - - PREDICTED: gibberellin 2-beta-dioxygenase 2 [Jatropha curcas]
17 Hb_001769_120 0.1211045064 - - PREDICTED: tetratricopeptide repeat protein 7A [Jatropha curcas]
18 Hb_000365_180 0.1246136448 - - PREDICTED: protein LURP-one-related 8-like [Pyrus x bretschneideri]
19 Hb_003777_120 0.124907673 - - -
20 Hb_000071_090 0.1253040324 - - PREDICTED: probable protein phosphatase 2C 4 [Jatropha curcas]

Gene co-expression network

sample Hb_000878_090 Hb_000878_090 Hb_009907_020 Hb_009907_020 Hb_000878_090--Hb_009907_020 Hb_001160_050 Hb_001160_050 Hb_000878_090--Hb_001160_050 Hb_008749_010 Hb_008749_010 Hb_000878_090--Hb_008749_010 Hb_002374_030 Hb_002374_030 Hb_000878_090--Hb_002374_030 Hb_004040_010 Hb_004040_010 Hb_000878_090--Hb_004040_010 Hb_000152_410 Hb_000152_410 Hb_000878_090--Hb_000152_410 Hb_009907_020--Hb_001160_050 Hb_002311_500 Hb_002311_500 Hb_009907_020--Hb_002311_500 Hb_000771_040 Hb_000771_040 Hb_009907_020--Hb_000771_040 Hb_001769_120 Hb_001769_120 Hb_009907_020--Hb_001769_120 Hb_009907_020--Hb_008749_010 Hb_000836_420 Hb_000836_420 Hb_001160_050--Hb_000836_420 Hb_001160_050--Hb_002374_030 Hb_189208_060 Hb_189208_060 Hb_001160_050--Hb_189208_060 Hb_001160_050--Hb_000152_410 Hb_000365_180 Hb_000365_180 Hb_008749_010--Hb_000365_180 Hb_003747_250 Hb_003747_250 Hb_008749_010--Hb_003747_250 Hb_000163_180 Hb_000163_180 Hb_008749_010--Hb_000163_180 Hb_004228_070 Hb_004228_070 Hb_008749_010--Hb_004228_070 Hb_001989_070 Hb_001989_070 Hb_008749_010--Hb_001989_070 Hb_002374_030--Hb_189208_060 Hb_008406_070 Hb_008406_070 Hb_002374_030--Hb_008406_070 Hb_000071_090 Hb_000071_090 Hb_002374_030--Hb_000071_090 Hb_000032_090 Hb_000032_090 Hb_002374_030--Hb_000032_090 Hb_002374_030--Hb_000836_420 Hb_008019_010 Hb_008019_010 Hb_004040_010--Hb_008019_010 Hb_054926_010 Hb_054926_010 Hb_004040_010--Hb_054926_010 Hb_018134_010 Hb_018134_010 Hb_004040_010--Hb_018134_010 Hb_011794_050 Hb_011794_050 Hb_004040_010--Hb_011794_050 Hb_000319_010 Hb_000319_010 Hb_004040_010--Hb_000319_010 Hb_003029_010 Hb_003029_010 Hb_000152_410--Hb_003029_010 Hb_002596_090 Hb_002596_090 Hb_000152_410--Hb_002596_090 Hb_000152_410--Hb_001769_120 Hb_000152_410--Hb_000836_420 Hb_028487_040 Hb_028487_040 Hb_000152_410--Hb_028487_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 2.36118 4.0121 2.21376 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.528611 1.26485

CAGE analysis