Hb_000878_100

Information

Type -
Description -
Location Contig878: 136775-143455
Sequence    

Annotation

kegg
ID rcu:RCOM_0422670
description ATP-binding cassette transporter, putative (EC:3.6.3.29)
nr
ID XP_012074259.1
description PREDICTED: ABC transporter G family member 22 [Jatropha curcas]
swissprot
ID Q93YS4
description ABC transporter G family member 22 OS=Arabidopsis thaliana GN=ABCG22 PE=1 SV=1
trembl
ID A0A067KIL4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08715 PE=3 SV=1
Gene Ontology
ID GO:0016020
description abc transporter g family member 22 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_61305: 136407-137861 , PASA_asmbl_61306: 137538-137640 , PASA_asmbl_61307: 138170-142751
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000878_100 0.0 - - PREDICTED: ABC transporter G family member 22 [Jatropha curcas]
2 Hb_080147_080 0.1549721032 - - peroxiredoxin, putative [Ricinus communis]
3 Hb_000768_010 0.1641914824 - - PREDICTED: protein TRANSPARENT TESTA 12-like isoform X3 [Citrus sinensis]
4 Hb_006420_020 0.1658906156 - - PREDICTED: UPF0392 protein RCOM_0530710 [Jatropha curcas]
5 Hb_011465_030 0.1792153137 - - PREDICTED: B2 protein [Jatropha curcas]
6 Hb_000265_250 0.1821382581 - - auxilin, putative [Ricinus communis]
7 Hb_040600_010 0.1837834967 - - hypothetical protein VITISV_036432 [Vitis vinifera]
8 Hb_003906_190 0.1841741531 - - hypothetical protein EUGRSUZ_K00213 [Eucalyptus grandis]
9 Hb_002742_080 0.1857680849 - - unknown [Populus trichocarpa]
10 Hb_010584_010 0.1941551605 - - PREDICTED: probable zinc transporter protein DDB_G0282067 [Jatropha curcas]
11 Hb_002626_040 0.1979113863 - - PREDICTED: inter-alpha-trypsin inhibitor heavy chain H3 isoform X1 [Jatropha curcas]
12 Hb_000540_120 0.2006485931 - - PREDICTED: probable serine/threonine-protein kinase RLCKVII [Jatropha curcas]
13 Hb_003710_040 0.2008931428 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance RPP13-like protein 4 [Jatropha curcas]
14 Hb_000886_060 0.2009254097 - - PREDICTED: serine/threonine-protein kinase SAPK10 isoform X2 [Vitis vinifera]
15 Hb_075449_020 0.2009965899 - - PREDICTED: uncharacterized protein LOC105633096 [Jatropha curcas]
16 Hb_000116_460 0.2014951273 - - PREDICTED: plant intracellular Ras-group-related LRR protein 4 [Jatropha curcas]
17 Hb_001493_010 0.2024980475 - - triacylglycerol acidic lipase TAL4 [Ricinus communis]
18 Hb_155702_010 0.2029585144 - - Tetraspanin-5 [Gossypium arboreum]
19 Hb_010831_020 0.2052443666 - - hypothetical protein POPTR_0013s02830g [Populus trichocarpa]
20 Hb_001195_150 0.2056032112 transcription factor TF Family: MYB-related myb family transcription factor family protein [Populus trichocarpa]

Gene co-expression network

sample Hb_000878_100 Hb_000878_100 Hb_080147_080 Hb_080147_080 Hb_000878_100--Hb_080147_080 Hb_000768_010 Hb_000768_010 Hb_000878_100--Hb_000768_010 Hb_006420_020 Hb_006420_020 Hb_000878_100--Hb_006420_020 Hb_011465_030 Hb_011465_030 Hb_000878_100--Hb_011465_030 Hb_000265_250 Hb_000265_250 Hb_000878_100--Hb_000265_250 Hb_040600_010 Hb_040600_010 Hb_000878_100--Hb_040600_010 Hb_080147_080--Hb_006420_020 Hb_075449_020 Hb_075449_020 Hb_080147_080--Hb_075449_020 Hb_128376_010 Hb_128376_010 Hb_080147_080--Hb_128376_010 Hb_000390_220 Hb_000390_220 Hb_080147_080--Hb_000390_220 Hb_002742_080 Hb_002742_080 Hb_080147_080--Hb_002742_080 Hb_002626_040 Hb_002626_040 Hb_000768_010--Hb_002626_040 Hb_000768_010--Hb_006420_020 Hb_156144_010 Hb_156144_010 Hb_000768_010--Hb_156144_010 Hb_000540_120 Hb_000540_120 Hb_000768_010--Hb_000540_120 Hb_010831_020 Hb_010831_020 Hb_000768_010--Hb_010831_020 Hb_000571_150 Hb_000571_150 Hb_006420_020--Hb_000571_150 Hb_003125_030 Hb_003125_030 Hb_006420_020--Hb_003125_030 Hb_006420_020--Hb_010831_020 Hb_006745_010 Hb_006745_010 Hb_006420_020--Hb_006745_010 Hb_002477_150 Hb_002477_150 Hb_011465_030--Hb_002477_150 Hb_011465_030--Hb_000265_250 Hb_007403_050 Hb_007403_050 Hb_011465_030--Hb_007403_050 Hb_001946_300 Hb_001946_300 Hb_011465_030--Hb_001946_300 Hb_002849_080 Hb_002849_080 Hb_011465_030--Hb_002849_080 Hb_011465_030--Hb_000540_120 Hb_000265_250--Hb_002477_150 Hb_148209_020 Hb_148209_020 Hb_000265_250--Hb_148209_020 Hb_009028_030 Hb_009028_030 Hb_000265_250--Hb_009028_030 Hb_001247_230 Hb_001247_230 Hb_000265_250--Hb_001247_230 Hb_000265_250--Hb_002849_080 Hb_040600_010--Hb_000768_010 Hb_008147_050 Hb_008147_050 Hb_040600_010--Hb_008147_050 Hb_011164_010 Hb_011164_010 Hb_040600_010--Hb_011164_010 Hb_120662_010 Hb_120662_010 Hb_040600_010--Hb_120662_010 Hb_000016_030 Hb_000016_030 Hb_040600_010--Hb_000016_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
61.7844 77.4915 11.7935 29.6657 51.9817 58.4161
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
25.2646 2.53143 7.14815 1.10248 15.2069

CAGE analysis