Hb_000878_110

Information

Type -
Description -
Location Contig878: 162523-168810
Sequence    

Annotation

kegg
ID rcu:RCOM_0422680
description calcium-dependent protein kinase, putative (EC:2.7.11.17)
nr
ID XP_002524101.1
description calcium-dependent protein kinase, putative [Ricinus communis]
swissprot
ID Q9ZV15
description Calcium-dependent protein kinase 20 OS=Arabidopsis thaliana GN=CPK20 PE=3 SV=1
trembl
ID B9SDN2
description Calcium-dependent protein kinase, putative OS=Ricinus communis GN=RCOM_0422680 PE=4 SV=1
Gene Ontology
ID GO:0004672
description calcium-dependent protein kinase 20-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000878_110 0.0 - - calcium-dependent protein kinase, putative [Ricinus communis]
2 Hb_004943_040 0.1738261516 - - PREDICTED: BTB/POZ domain-containing protein At1g30440 isoform X1 [Jatropha curcas]
3 Hb_000028_430 0.1767867915 - - PREDICTED: uncharacterized protein LOC105641369 isoform X1 [Jatropha curcas]
4 Hb_001188_100 0.1777509101 - - hypothetical protein JCGZ_05568 [Jatropha curcas]
5 Hb_000283_140 0.1800780305 - - PREDICTED: transcriptional corepressor LEUNIG-like isoform X1 [Jatropha curcas]
6 Hb_000140_060 0.1801015967 - - 50S ribosomal protein L5, putative [Ricinus communis]
7 Hb_012762_040 0.1803728343 - - big map kinase/bmk, putative [Ricinus communis]
8 Hb_000098_170 0.1821155171 - - hypothetical protein JCGZ_06491 [Jatropha curcas]
9 Hb_000227_280 0.1825545371 - - PREDICTED: putative leucine-rich repeat receptor-like serine/threonine-protein kinase At2g14440 [Jatropha curcas]
10 Hb_009252_020 0.1837117797 - - PREDICTED: serine/threonine-protein kinase HT1-like [Jatropha curcas]
11 Hb_017098_040 0.1899937701 - - Cyclic nucleotide-gated ion channel, putative [Ricinus communis]
12 Hb_000188_060 0.1901825013 - - PREDICTED: zinc finger A20 and AN1 domain-containing stress-associated protein 4-like [Jatropha curcas]
13 Hb_000086_090 0.1904983208 - - PREDICTED: U-box domain-containing protein 3 [Jatropha curcas]
14 Hb_000570_020 0.1913101441 - - PREDICTED: probable beta-1,4-xylosyltransferase IRX9H isoform X1 [Jatropha curcas]
15 Hb_000349_200 0.1914247156 - - PREDICTED: probable sugar phosphate/phosphate translocator At1g12500 [Jatropha curcas]
16 Hb_003680_030 0.1938875756 - - PREDICTED: aspartic proteinase-like protein 2 isoform X3 [Jatropha curcas]
17 Hb_000152_440 0.19568255 - - PREDICTED: UDP-glucuronate 4-epimerase 3-like [Jatropha curcas]
18 Hb_002217_320 0.19587422 - - PREDICTED: probable O-acetyltransferase CAS1 isoform X2 [Jatropha curcas]
19 Hb_000928_120 0.1959058511 - - PREDICTED: benzyl alcohol O-benzoyltransferase-like [Jatropha curcas]
20 Hb_003849_190 0.1959162135 - - PREDICTED: uncharacterized protein LOC105644700 [Jatropha curcas]

Gene co-expression network

sample Hb_000878_110 Hb_000878_110 Hb_004943_040 Hb_004943_040 Hb_000878_110--Hb_004943_040 Hb_000028_430 Hb_000028_430 Hb_000878_110--Hb_000028_430 Hb_001188_100 Hb_001188_100 Hb_000878_110--Hb_001188_100 Hb_000283_140 Hb_000283_140 Hb_000878_110--Hb_000283_140 Hb_000140_060 Hb_000140_060 Hb_000878_110--Hb_000140_060 Hb_012762_040 Hb_012762_040 Hb_000878_110--Hb_012762_040 Hb_000570_020 Hb_000570_020 Hb_004943_040--Hb_000570_020 Hb_004943_040--Hb_000283_140 Hb_001865_100 Hb_001865_100 Hb_004943_040--Hb_001865_100 Hb_000422_080 Hb_000422_080 Hb_004943_040--Hb_000422_080 Hb_000157_140 Hb_000157_140 Hb_004943_040--Hb_000157_140 Hb_002805_090 Hb_002805_090 Hb_004943_040--Hb_002805_090 Hb_005054_020 Hb_005054_020 Hb_000028_430--Hb_005054_020 Hb_001250_080 Hb_001250_080 Hb_000028_430--Hb_001250_080 Hb_000227_280 Hb_000227_280 Hb_000028_430--Hb_000227_280 Hb_000928_120 Hb_000928_120 Hb_000028_430--Hb_000928_120 Hb_003001_130 Hb_003001_130 Hb_000028_430--Hb_003001_130 Hb_003849_190 Hb_003849_190 Hb_000028_430--Hb_003849_190 Hb_000012_080 Hb_000012_080 Hb_001188_100--Hb_000012_080 Hb_006829_060 Hb_006829_060 Hb_001188_100--Hb_006829_060 Hb_000152_440 Hb_000152_440 Hb_001188_100--Hb_000152_440 Hb_005062_060 Hb_005062_060 Hb_001188_100--Hb_005062_060 Hb_002272_240 Hb_002272_240 Hb_001188_100--Hb_002272_240 Hb_000796_150 Hb_000796_150 Hb_001188_100--Hb_000796_150 Hb_012807_150 Hb_012807_150 Hb_000283_140--Hb_012807_150 Hb_000638_060 Hb_000638_060 Hb_000283_140--Hb_000638_060 Hb_000283_140--Hb_000570_020 Hb_000283_140--Hb_000928_120 Hb_000271_220 Hb_000271_220 Hb_000283_140--Hb_000271_220 Hb_000069_360 Hb_000069_360 Hb_000140_060--Hb_000069_360 Hb_003994_080 Hb_003994_080 Hb_000140_060--Hb_003994_080 Hb_000140_060--Hb_000422_080 Hb_001195_660 Hb_001195_660 Hb_000140_060--Hb_001195_660 Hb_000749_020 Hb_000749_020 Hb_000140_060--Hb_000749_020 Hb_000099_170 Hb_000099_170 Hb_000140_060--Hb_000099_170 Hb_000979_140 Hb_000979_140 Hb_012762_040--Hb_000979_140 Hb_012762_040--Hb_001865_100 Hb_000000_480 Hb_000000_480 Hb_012762_040--Hb_000000_480 Hb_001729_020 Hb_001729_020 Hb_012762_040--Hb_001729_020 Hb_000197_180 Hb_000197_180 Hb_012762_040--Hb_000197_180 Hb_000098_180 Hb_000098_180 Hb_012762_040--Hb_000098_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0275491 0.385465 0.473249 0.794088 0.0519571 0.129615
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0252425 0.139025 0.262879 0.0474572 0.502097

CAGE analysis