Hb_000878_160

Information

Type -
Description -
Location Contig878: 253430-273070
Sequence    

Annotation

kegg
ID rcu:RCOM_0422880
description d-lactate dehydrogenase, putative (EC:1.1.2.4)
nr
ID XP_012090882.1
description PREDICTED: D-lactate dehydrogenase [cytochrome], mitochondrial [Jatropha curcas]
swissprot
ID Q94AX4
description D-lactate dehydrogenase [cytochrome], mitochondrial OS=Arabidopsis thaliana GN=DLD PE=1 SV=1
trembl
ID A0A067JGK7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_03071 PE=4 SV=1
Gene Ontology
ID GO:0008762
description d-lactate dehydrogenase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_61316: 253658-258998 , PASA_asmbl_61318: 272268-272914
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000878_160 0.0 - - PREDICTED: D-lactate dehydrogenase [cytochrome], mitochondrial [Jatropha curcas]
2 Hb_002461_020 0.0807124538 - - PREDICTED: uncharacterized protein LOC105642649 isoform X2 [Jatropha curcas]
3 Hb_002600_070 0.0812778214 transcription factor TF Family: TAZ PREDICTED: histone acetyltransferase HAC12 [Jatropha curcas]
4 Hb_009178_010 0.0817628075 - - PREDICTED: uncharacterized protein LOC105637474 [Jatropha curcas]
5 Hb_007283_010 0.0819313002 - - PREDICTED: pre-mRNA-processing protein 40C isoform X1 [Jatropha curcas]
6 Hb_004324_330 0.0829178909 - - PREDICTED: uncharacterized protein LOC105648374 [Jatropha curcas]
7 Hb_005333_140 0.0833038214 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 16 isoform X1 [Jatropha curcas]
8 Hb_000098_240 0.0850954442 - - PREDICTED: UDP-glucose:glycoprotein glucosyltransferase [Jatropha curcas]
9 Hb_023344_140 0.0850987617 - - PREDICTED: WD repeat-containing protein 70 [Jatropha curcas]
10 Hb_000030_140 0.0853684822 - - PREDICTED: general negative regulator of transcription subunit 3 isoform X1 [Jatropha curcas]
11 Hb_000245_150 0.0862392131 - - PREDICTED: ATP-dependent zinc metalloprotease FtsH [Jatropha curcas]
12 Hb_001396_020 0.0864796956 - - glucose-6-phosphate dehydrogenase [Hevea brasiliensis]
13 Hb_009158_060 0.0872667096 - - PREDICTED: CDPK-related kinase 3 [Jatropha curcas]
14 Hb_000172_360 0.0875458331 - - PREDICTED: apoptotic chromatin condensation inducer in the nucleus [Jatropha curcas]
15 Hb_000300_560 0.0893864404 - - PREDICTED: probable glycosyltransferase At5g03795 isoform X1 [Jatropha curcas]
16 Hb_003093_040 0.0906657477 - - PREDICTED: nucleolar complex protein 4 homolog isoform X1 [Jatropha curcas]
17 Hb_003925_060 0.0913435927 - - PREDICTED: uncharacterized protein LOC105645218 isoform X1 [Jatropha curcas]
18 Hb_005305_130 0.0915681876 - - PREDICTED: sulfite reductase [ferredoxin], chloroplastic [Jatropha curcas]
19 Hb_008054_040 0.092910475 - - PREDICTED: cullin-4 [Jatropha curcas]
20 Hb_005323_010 0.0936008148 - - PREDICTED: uncharacterized protein LOC105642810 [Jatropha curcas]

Gene co-expression network

sample Hb_000878_160 Hb_000878_160 Hb_002461_020 Hb_002461_020 Hb_000878_160--Hb_002461_020 Hb_002600_070 Hb_002600_070 Hb_000878_160--Hb_002600_070 Hb_009178_010 Hb_009178_010 Hb_000878_160--Hb_009178_010 Hb_007283_010 Hb_007283_010 Hb_000878_160--Hb_007283_010 Hb_004324_330 Hb_004324_330 Hb_000878_160--Hb_004324_330 Hb_005333_140 Hb_005333_140 Hb_000878_160--Hb_005333_140 Hb_002461_020--Hb_005333_140 Hb_000996_020 Hb_000996_020 Hb_002461_020--Hb_000996_020 Hb_000030_140 Hb_000030_140 Hb_002461_020--Hb_000030_140 Hb_000260_760 Hb_000260_760 Hb_002461_020--Hb_000260_760 Hb_001221_090 Hb_001221_090 Hb_002461_020--Hb_001221_090 Hb_170077_010 Hb_170077_010 Hb_002461_020--Hb_170077_010 Hb_000748_090 Hb_000748_090 Hb_002600_070--Hb_000748_090 Hb_007012_030 Hb_007012_030 Hb_002600_070--Hb_007012_030 Hb_000771_170 Hb_000771_170 Hb_002600_070--Hb_000771_170 Hb_001277_340 Hb_001277_340 Hb_002600_070--Hb_001277_340 Hb_000482_050 Hb_000482_050 Hb_002600_070--Hb_000482_050 Hb_009158_060 Hb_009158_060 Hb_002600_070--Hb_009158_060 Hb_004718_060 Hb_004718_060 Hb_009178_010--Hb_004718_060 Hb_009178_010--Hb_000260_760 Hb_002686_410 Hb_002686_410 Hb_009178_010--Hb_002686_410 Hb_000034_110 Hb_000034_110 Hb_009178_010--Hb_000034_110 Hb_009178_010--Hb_000030_140 Hb_000956_040 Hb_000956_040 Hb_009178_010--Hb_000956_040 Hb_005288_070 Hb_005288_070 Hb_007283_010--Hb_005288_070 Hb_000457_230 Hb_000457_230 Hb_007283_010--Hb_000457_230 Hb_030414_040 Hb_030414_040 Hb_007283_010--Hb_030414_040 Hb_007283_010--Hb_004324_330 Hb_031284_010 Hb_031284_010 Hb_007283_010--Hb_031284_010 Hb_000205_260 Hb_000205_260 Hb_007283_010--Hb_000205_260 Hb_000175_410 Hb_000175_410 Hb_004324_330--Hb_000175_410 Hb_002233_130 Hb_002233_130 Hb_004324_330--Hb_002233_130 Hb_007305_020 Hb_007305_020 Hb_004324_330--Hb_007305_020 Hb_001244_150 Hb_001244_150 Hb_004324_330--Hb_001244_150 Hb_004324_330--Hb_000205_260 Hb_000529_060 Hb_000529_060 Hb_005333_140--Hb_000529_060 Hb_005333_140--Hb_000996_020 Hb_023344_140 Hb_023344_140 Hb_005333_140--Hb_023344_140 Hb_000046_600 Hb_000046_600 Hb_005333_140--Hb_000046_600 Hb_000189_630 Hb_000189_630 Hb_005333_140--Hb_000189_630
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.50623 6.7891 10.4932 5.68864 4.57991 4.06712
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.80567 2.5442 1.75738 5.46522 9.02462

CAGE analysis