Hb_000878_170

Information

Type -
Description -
Location Contig878: 278539-281643
Sequence    

Annotation

kegg
ID tcc:TCM_025064
description SPX (SYG1/Pho81/XPR1) domain-containing protein / zinc finger (C3HC4-type RING finger) protein-related
nr
ID XP_012090881.1
description PREDICTED: probable E3 ubiquitin-protein ligase BAH1-like [Jatropha curcas]
swissprot
ID Q8GW10
description Probable E3 ubiquitin-protein ligase BAH1-like OS=Arabidopsis thaliana GN=RF178 PE=2 SV=1
trembl
ID A0A067JDL6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_03070 PE=4 SV=1
Gene Ontology
ID GO:0005515
description probable e3 ubiquitin-protein ligase bah1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000878_170 0.0 - - PREDICTED: probable E3 ubiquitin-protein ligase BAH1-like [Jatropha curcas]
2 Hb_000008_320 0.1240371899 - - PREDICTED: uncharacterized protein LOC105628090 [Jatropha curcas]
3 Hb_000798_030 0.1398159946 - - PREDICTED: uncharacterized protein LOC105635919 [Jatropha curcas]
4 Hb_002529_100 0.1402213252 - - PREDICTED: DET1- and DDB1-associated protein 1 isoform X1 [Jatropha curcas]
5 Hb_002447_030 0.141465194 - - PREDICTED: cytochrome b5 domain-containing protein RLF [Jatropha curcas]
6 Hb_024650_020 0.1426832952 - - PREDICTED: uncharacterized protein LOC105646626 [Jatropha curcas]
7 Hb_000684_090 0.1450035843 transcription factor TF Family: S1Fa-like -
8 Hb_003581_090 0.1460847973 - - PREDICTED: galactose oxidase [Jatropha curcas]
9 Hb_000188_130 0.1462346921 - - PREDICTED: uncharacterized protein LOC102628744 [Citrus sinensis]
10 Hb_042202_010 0.146440524 - - PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 2 [Cucumis melo]
11 Hb_001722_040 0.1507293561 - - PREDICTED: ubiquitin-conjugating enzyme E2 variant 1A-like [Jatropha curcas]
12 Hb_028347_010 0.1522421937 - - -
13 Hb_000965_020 0.1522725606 - - -
14 Hb_000412_110 0.1551505787 - - Rop4 [Hevea brasiliensis]
15 Hb_000436_050 0.1553504244 - - PREDICTED: INO80 complex subunit C [Jatropha curcas]
16 Hb_003185_020 0.155444605 transcription factor TF Family: GNAT PREDICTED: N-alpha-acetyltransferase 50 [Jatropha curcas]
17 Hb_000041_080 0.1559860292 - - PREDICTED: universal stress protein A-like protein [Jatropha curcas]
18 Hb_000417_110 0.1563173869 - - PREDICTED: uncharacterized protein LOC105649681 [Jatropha curcas]
19 Hb_001341_130 0.1598341104 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000023_230 0.1601540296 - - PREDICTED: uncharacterized protein LOC105637526 [Jatropha curcas]

Gene co-expression network

sample Hb_000878_170 Hb_000878_170 Hb_000008_320 Hb_000008_320 Hb_000878_170--Hb_000008_320 Hb_000798_030 Hb_000798_030 Hb_000878_170--Hb_000798_030 Hb_002529_100 Hb_002529_100 Hb_000878_170--Hb_002529_100 Hb_002447_030 Hb_002447_030 Hb_000878_170--Hb_002447_030 Hb_024650_020 Hb_024650_020 Hb_000878_170--Hb_024650_020 Hb_000684_090 Hb_000684_090 Hb_000878_170--Hb_000684_090 Hb_000008_320--Hb_002447_030 Hb_000008_320--Hb_002529_100 Hb_000085_200 Hb_000085_200 Hb_000008_320--Hb_000085_200 Hb_000926_290 Hb_000926_290 Hb_000008_320--Hb_000926_290 Hb_001722_040 Hb_001722_040 Hb_000008_320--Hb_001722_040 Hb_003050_230 Hb_003050_230 Hb_000008_320--Hb_003050_230 Hb_000417_110 Hb_000417_110 Hb_000798_030--Hb_000417_110 Hb_070986_010 Hb_070986_010 Hb_000798_030--Hb_070986_010 Hb_000634_050 Hb_000634_050 Hb_000798_030--Hb_000634_050 Hb_000045_190 Hb_000045_190 Hb_000798_030--Hb_000045_190 Hb_007741_050 Hb_007741_050 Hb_000798_030--Hb_007741_050 Hb_004204_120 Hb_004204_120 Hb_000798_030--Hb_004204_120 Hb_001257_080 Hb_001257_080 Hb_002529_100--Hb_001257_080 Hb_001951_110 Hb_001951_110 Hb_002529_100--Hb_001951_110 Hb_002529_100--Hb_000798_030 Hb_000023_230 Hb_000023_230 Hb_002529_100--Hb_000023_230 Hb_002529_100--Hb_000045_190 Hb_000056_340 Hb_000056_340 Hb_002529_100--Hb_000056_340 Hb_002447_030--Hb_000045_190 Hb_002447_030--Hb_024650_020 Hb_002447_030--Hb_000634_050 Hb_002447_030--Hb_001722_040 Hb_000362_210 Hb_000362_210 Hb_002447_030--Hb_000362_210 Hb_065500_050 Hb_065500_050 Hb_024650_020--Hb_065500_050 Hb_023386_080 Hb_023386_080 Hb_024650_020--Hb_023386_080 Hb_002282_020 Hb_002282_020 Hb_024650_020--Hb_002282_020 Hb_001427_120 Hb_001427_120 Hb_024650_020--Hb_001427_120 Hb_044662_070 Hb_044662_070 Hb_024650_020--Hb_044662_070 Hb_001828_090 Hb_001828_090 Hb_000684_090--Hb_001828_090 Hb_000270_270 Hb_000270_270 Hb_000684_090--Hb_000270_270 Hb_001512_070 Hb_001512_070 Hb_000684_090--Hb_001512_070 Hb_007101_150 Hb_007101_150 Hb_000684_090--Hb_007101_150 Hb_000015_080 Hb_000015_080 Hb_000684_090--Hb_000015_080 Hb_011360_140 Hb_011360_140 Hb_000684_090--Hb_011360_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.56754 0.544702 0.718283 0.156028 1.31373 1.05546
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.01979 2.53084 1.36334 0.0626035 0.0797597

CAGE analysis