Hb_000878_180

Information

Type -
Description -
Location Contig878: 284920-297358
Sequence    

Annotation

kegg
ID rcu:RCOM_0423090
description Ubiquitin carboxyl-terminal hydrolase, putative (EC:3.1.2.15)
nr
ID XP_012090874.1
description PREDICTED: ubiquitin carboxyl-terminal hydrolase 12 isoform X1 [Jatropha curcas]
swissprot
ID Q9FPT1
description Ubiquitin carboxyl-terminal hydrolase 12 OS=Arabidopsis thaliana GN=UBP12 PE=1 SV=2
trembl
ID A0A067JDI6
description Ubiquitin carboxyl-terminal hydrolase OS=Jatropha curcas GN=JCGZ_03064 PE=3 SV=1
Gene Ontology
ID GO:0005515
description ubiquitin carboxyl-terminal hydrolase 12 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_61319: 287715-288841 , PASA_asmbl_61320: 295640-297778 , PASA_asmbl_61321: 295640-297778
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000878_180 0.0 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 12 isoform X1 [Jatropha curcas]
2 Hb_002025_060 0.0518750221 - - PREDICTED: pentatricopeptide repeat-containing protein At1g73400, mitochondrial [Jatropha curcas]
3 Hb_002615_090 0.0562083325 - - PREDICTED: protein SMG7 isoform X1 [Jatropha curcas]
4 Hb_000680_090 0.058269738 - - Protein SEY1, putative [Ricinus communis]
5 Hb_002235_300 0.0686980985 - - PREDICTED: pentatricopeptide repeat-containing protein At5g15280 isoform X1 [Jatropha curcas]
6 Hb_009615_170 0.0725290189 - - PREDICTED: sphingoid long-chain bases kinase 1 isoform X1 [Jatropha curcas]
7 Hb_000084_250 0.0726276842 - - nucleolar phosphoprotein, putative [Ricinus communis]
8 Hb_000162_280 0.0726790895 - - PREDICTED: CTL-like protein DDB_G0288717 [Populus euphratica]
9 Hb_009112_010 0.0727529111 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 2 homolog A [Jatropha curcas]
10 Hb_004884_150 0.0743282804 - - PREDICTED: ubiquitin-activating enzyme E1 1-like [Jatropha curcas]
11 Hb_000390_320 0.0792258613 transcription factor TF Family: HSF PREDICTED: heat stress transcription factor A-1b-like [Jatropha curcas]
12 Hb_002890_090 0.0802478864 - - Auxin response factor 1 [Glycine soja]
13 Hb_000025_320 0.080373645 - - PREDICTED: pentatricopeptide repeat-containing protein At4g28010 [Jatropha curcas]
14 Hb_003455_020 0.0812073908 - - PREDICTED: transportin-1 [Jatropha curcas]
15 Hb_008112_030 0.0812434157 - - conserved hypothetical protein [Ricinus communis]
16 Hb_007904_030 0.0813789099 - - PREDICTED: nuclear mitotic apparatus protein 1 [Jatropha curcas]
17 Hb_000960_100 0.0821464565 - - PREDICTED: uncharacterized protein At1g51745 [Jatropha curcas]
18 Hb_002022_070 0.0826098892 - - PREDICTED: histidine--tRNA ligase [Jatropha curcas]
19 Hb_001767_140 0.0829620877 - - PREDICTED: protein-tyrosine-phosphatase MKP1 [Jatropha curcas]
20 Hb_027380_140 0.083081894 - - PREDICTED: uncharacterized protein LOC105634023 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000878_180 Hb_000878_180 Hb_002025_060 Hb_002025_060 Hb_000878_180--Hb_002025_060 Hb_002615_090 Hb_002615_090 Hb_000878_180--Hb_002615_090 Hb_000680_090 Hb_000680_090 Hb_000878_180--Hb_000680_090 Hb_002235_300 Hb_002235_300 Hb_000878_180--Hb_002235_300 Hb_009615_170 Hb_009615_170 Hb_000878_180--Hb_009615_170 Hb_000084_250 Hb_000084_250 Hb_000878_180--Hb_000084_250 Hb_002025_060--Hb_000084_250 Hb_002025_060--Hb_002235_300 Hb_008695_110 Hb_008695_110 Hb_002025_060--Hb_008695_110 Hb_002025_060--Hb_000680_090 Hb_001767_140 Hb_001767_140 Hb_002025_060--Hb_001767_140 Hb_000960_100 Hb_000960_100 Hb_002615_090--Hb_000960_100 Hb_003785_040 Hb_003785_040 Hb_002615_090--Hb_003785_040 Hb_002615_090--Hb_002235_300 Hb_002253_080 Hb_002253_080 Hb_002615_090--Hb_002253_080 Hb_002615_090--Hb_001767_140 Hb_000390_320 Hb_000390_320 Hb_000680_090--Hb_000390_320 Hb_000680_090--Hb_000084_250 Hb_000162_280 Hb_000162_280 Hb_000680_090--Hb_000162_280 Hb_000680_090--Hb_002615_090 Hb_003640_040 Hb_003640_040 Hb_000680_090--Hb_003640_040 Hb_000977_120 Hb_000977_120 Hb_002235_300--Hb_000977_120 Hb_000684_250 Hb_000684_250 Hb_002235_300--Hb_000684_250 Hb_002235_300--Hb_002253_080 Hb_000025_320 Hb_000025_320 Hb_002235_300--Hb_000025_320 Hb_002267_140 Hb_002267_140 Hb_002235_300--Hb_002267_140 Hb_001821_090 Hb_001821_090 Hb_009615_170--Hb_001821_090 Hb_012395_140 Hb_012395_140 Hb_009615_170--Hb_012395_140 Hb_004884_150 Hb_004884_150 Hb_009615_170--Hb_004884_150 Hb_159558_010 Hb_159558_010 Hb_009615_170--Hb_159558_010 Hb_000579_230 Hb_000579_230 Hb_009615_170--Hb_000579_230 Hb_000174_060 Hb_000174_060 Hb_009615_170--Hb_000174_060 Hb_000084_250--Hb_008695_110 Hb_000574_440 Hb_000574_440 Hb_000084_250--Hb_000574_440 Hb_006831_110 Hb_006831_110 Hb_000084_250--Hb_006831_110 Hb_000777_050 Hb_000777_050 Hb_000084_250--Hb_000777_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
28.0195 34.972 20.2805 17.9295 32.0787 36.5803
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
11.4619 12.895 27.7274 23.7875 16.6497

CAGE analysis