Hb_000879_010

Information

Type -
Description -
Location Contig879: 3968-4423
Sequence    

Annotation

kegg
ID rcu:RCOM_1586760
description hypothetical protein
nr
ID XP_012068189.1
description PREDICTED: uncharacterized protein LOC105630824 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067L2Z1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16005 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_61332: 3915-4627
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000879_010 0.0 - - PREDICTED: uncharacterized protein LOC105630824 [Jatropha curcas]
2 Hb_002811_230 0.1121466445 - - PREDICTED: mitochondrial import inner membrane translocase subunit TIM23-1 [Jatropha curcas]
3 Hb_000914_090 0.1339761793 - - PREDICTED: uncharacterized protein LOC105648257 [Jatropha curcas]
4 Hb_001442_020 0.1450092939 - - unknown [Populus trichocarpa]
5 Hb_007617_020 0.1474532127 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000196_050 0.1485834764 - - hypothetical protein JCGZ_20265 [Jatropha curcas]
7 Hb_001205_070 0.1489473669 - - PREDICTED: vam6/Vps39-like protein [Jatropha curcas]
8 Hb_003683_040 0.1490517908 - - unnamed protein product [Coffea canephora]
9 Hb_154826_010 0.1547302701 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
10 Hb_000917_110 0.1552244777 - - PREDICTED: nudix hydrolase 1 [Jatropha curcas]
11 Hb_009265_090 0.156541775 - - PREDICTED: uncharacterized protein LOC105649618 [Jatropha curcas]
12 Hb_001159_140 0.156613516 - - hypothetical protein POPTR_0001s08090g [Populus trichocarpa]
13 Hb_004800_070 0.1589211854 - - -
14 Hb_000264_090 0.159088932 - - PREDICTED: putative serine/threonine-protein kinase isoform X1 [Jatropha curcas]
15 Hb_000258_350 0.1622133001 - - PREDICTED: 40S ribosomal protein S9-2 [Jatropha curcas]
16 Hb_000172_640 0.1627855215 - - hypothetical protein POPTR_0007s06250g [Populus trichocarpa]
17 Hb_000252_150 0.1636345666 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000561_020 0.1640225092 - - hypothetical protein JCGZ_19196 [Jatropha curcas]
19 Hb_002375_090 0.1640339024 - - -
20 Hb_002471_150 0.1645363024 - - PREDICTED: 54S ribosomal protein L24, mitochondrial [Jatropha curcas]

Gene co-expression network

sample Hb_000879_010 Hb_000879_010 Hb_002811_230 Hb_002811_230 Hb_000879_010--Hb_002811_230 Hb_000914_090 Hb_000914_090 Hb_000879_010--Hb_000914_090 Hb_001442_020 Hb_001442_020 Hb_000879_010--Hb_001442_020 Hb_007617_020 Hb_007617_020 Hb_000879_010--Hb_007617_020 Hb_000196_050 Hb_000196_050 Hb_000879_010--Hb_000196_050 Hb_001205_070 Hb_001205_070 Hb_000879_010--Hb_001205_070 Hb_001159_140 Hb_001159_140 Hb_002811_230--Hb_001159_140 Hb_002811_230--Hb_007617_020 Hb_001946_210 Hb_001946_210 Hb_002811_230--Hb_001946_210 Hb_000189_270 Hb_000189_270 Hb_002811_230--Hb_000189_270 Hb_003641_020 Hb_003641_020 Hb_002811_230--Hb_003641_020 Hb_003992_240 Hb_003992_240 Hb_002811_230--Hb_003992_240 Hb_000914_090--Hb_001205_070 Hb_000914_090--Hb_000196_050 Hb_000914_090--Hb_002811_230 Hb_002909_070 Hb_002909_070 Hb_000914_090--Hb_002909_070 Hb_006582_020 Hb_006582_020 Hb_000914_090--Hb_006582_020 Hb_002110_120 Hb_002110_120 Hb_001442_020--Hb_002110_120 Hb_000200_100 Hb_000200_100 Hb_001442_020--Hb_000200_100 Hb_001269_630 Hb_001269_630 Hb_001442_020--Hb_001269_630 Hb_007101_150 Hb_007101_150 Hb_001442_020--Hb_007101_150 Hb_008173_090 Hb_008173_090 Hb_001442_020--Hb_008173_090 Hb_000522_080 Hb_000522_080 Hb_001442_020--Hb_000522_080 Hb_011805_080 Hb_011805_080 Hb_007617_020--Hb_011805_080 Hb_000487_250 Hb_000487_250 Hb_007617_020--Hb_000487_250 Hb_007617_020--Hb_001946_210 Hb_002311_350 Hb_002311_350 Hb_007617_020--Hb_002311_350 Hb_169246_010 Hb_169246_010 Hb_007617_020--Hb_169246_010 Hb_003683_040 Hb_003683_040 Hb_000196_050--Hb_003683_040 Hb_002316_060 Hb_002316_060 Hb_000196_050--Hb_002316_060 Hb_000184_050 Hb_000184_050 Hb_000196_050--Hb_000184_050 Hb_009554_010 Hb_009554_010 Hb_000196_050--Hb_009554_010 Hb_000815_260 Hb_000815_260 Hb_000196_050--Hb_000815_260 Hb_031042_010 Hb_031042_010 Hb_000196_050--Hb_031042_010 Hb_018790_060 Hb_018790_060 Hb_001205_070--Hb_018790_060 Hb_002631_060 Hb_002631_060 Hb_001205_070--Hb_002631_060 Hb_001488_070 Hb_001488_070 Hb_001205_070--Hb_001488_070 Hb_003376_350 Hb_003376_350 Hb_001205_070--Hb_003376_350 Hb_000413_010 Hb_000413_010 Hb_001205_070--Hb_000413_010 Hb_000061_420 Hb_000061_420 Hb_001205_070--Hb_000061_420
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
25.1491 35.2387 6.05533 21.5838 31.9196 21.4368
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
30.5831 82.9094 23.715 25.4993 1.12604

CAGE analysis