Hb_000879_050

Information

Type -
Description -
Location Contig879: 83945-84926
Sequence    

Annotation

kegg
ID pop:POPTR_0014s01530g
description POPTRDRAFT_823865; hypothetical protein
nr
ID XP_010999891.1
description PREDICTED: uncharacterized protein LOC105107600 [Populus euphratica]
swissprot
ID -
description -
trembl
ID B9IBQ3
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0014s01530g PE=4 SV=2
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_61347: 83776-84766
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000879_050 0.0 - - PREDICTED: uncharacterized protein LOC105107600 [Populus euphratica]
2 Hb_000605_010 0.1697088931 - - hypothetical protein JCGZ_05865 [Jatropha curcas]
3 Hb_004007_150 0.2131101975 transcription factor TF Family: TAZ PREDICTED: BTB/POZ and TAZ domain-containing protein 4 [Jatropha curcas]
4 Hb_001677_050 0.2137240177 desease resistance Gene Name: NB-ARC Disease resistance protein RPP8, putative [Ricinus communis]
5 Hb_002124_020 0.215265285 transcription factor TF Family: bHLH lMYC3 [Hevea brasiliensis]
6 Hb_001632_010 0.2271515145 - - hypothetical protein JCGZ_05865 [Jatropha curcas]
7 Hb_003534_040 0.2302872846 - - hypothetical protein POPTR_0009s14420g [Populus trichocarpa]
8 Hb_000559_050 0.231057032 - - hypothetical protein JCGZ_20429 [Jatropha curcas]
9 Hb_088542_010 0.2332672315 - - hypothetical protein JCGZ_05865 [Jatropha curcas]
10 Hb_073212_010 0.2346715665 - - hypothetical protein JCGZ_05865 [Jatropha curcas]
11 Hb_027998_030 0.2424025539 - - laccase, putative [Ricinus communis]
12 Hb_002234_220 0.2498663318 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein ANTHOCYANINLESS 2 isoform X1 [Jatropha curcas]
13 Hb_000395_100 0.2598628443 - - Protein MYG1, putative [Ricinus communis]
14 Hb_001138_010 0.2632423072 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
15 Hb_001691_050 0.2688108053 - - -
16 Hb_002493_030 0.2690520093 - - -
17 Hb_000094_390 0.2721076315 - - PREDICTED: acyl-[acyl-carrier-protein] desaturase, chloroplastic-like [Nelumbo nucifera]
18 Hb_001178_120 0.2788819857 - - non-ltr retroelement reverse transcriptase [Rosa rugosa]
19 Hb_000153_020 0.2801262105 - - conserved hypothetical protein [Ricinus communis]
20 Hb_001741_100 0.2816916191 rubber biosynthesis Gene Name: REF6 unnamed protein product [Vitis vinifera]

Gene co-expression network

sample Hb_000879_050 Hb_000879_050 Hb_000605_010 Hb_000605_010 Hb_000879_050--Hb_000605_010 Hb_004007_150 Hb_004007_150 Hb_000879_050--Hb_004007_150 Hb_001677_050 Hb_001677_050 Hb_000879_050--Hb_001677_050 Hb_002124_020 Hb_002124_020 Hb_000879_050--Hb_002124_020 Hb_001632_010 Hb_001632_010 Hb_000879_050--Hb_001632_010 Hb_003534_040 Hb_003534_040 Hb_000879_050--Hb_003534_040 Hb_001138_010 Hb_001138_010 Hb_000605_010--Hb_001138_010 Hb_073212_010 Hb_073212_010 Hb_000605_010--Hb_073212_010 Hb_002234_220 Hb_002234_220 Hb_000605_010--Hb_002234_220 Hb_000605_010--Hb_001677_050 Hb_088542_010 Hb_088542_010 Hb_000605_010--Hb_088542_010 Hb_004007_150--Hb_003534_040 Hb_004007_150--Hb_073212_010 Hb_000101_210 Hb_000101_210 Hb_004007_150--Hb_000101_210 Hb_004007_150--Hb_001677_050 Hb_031073_010 Hb_031073_010 Hb_004007_150--Hb_031073_010 Hb_004007_150--Hb_088542_010 Hb_001677_050--Hb_001632_010 Hb_001677_050--Hb_088542_010 Hb_001677_050--Hb_001138_010 Hb_001677_050--Hb_073212_010 Hb_002124_020--Hb_002234_220 Hb_000200_060 Hb_000200_060 Hb_002124_020--Hb_000200_060 Hb_001741_100 Hb_001741_100 Hb_002124_020--Hb_001741_100 Hb_002124_020--Hb_000605_010 Hb_000258_020 Hb_000258_020 Hb_002124_020--Hb_000258_020 Hb_001632_010--Hb_088542_010 Hb_001632_010--Hb_073212_010 Hb_129067_010 Hb_129067_010 Hb_001632_010--Hb_129067_010 Hb_001632_010--Hb_000605_010 Hb_012384_050 Hb_012384_050 Hb_001632_010--Hb_012384_050 Hb_003534_040--Hb_073212_010 Hb_018344_010 Hb_018344_010 Hb_003534_040--Hb_018344_010 Hb_027998_030 Hb_027998_030 Hb_003534_040--Hb_027998_030 Hb_001691_050 Hb_001691_050 Hb_003534_040--Hb_001691_050 Hb_003534_040--Hb_000101_210
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
35.9252 1.15809 0.191356 5.84556 16.9515 9.08594
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.568261 0 0 2.65038 0.170526

CAGE analysis