Hb_000879_100

Information

Type desease resistance
Description Gene Name: NB-ARC
Location Contig879: 126846-133076
Sequence    

Annotation

kegg
ID tcc:TCM_019035
description Leucine-rich repeat-containing protein, putative
nr
ID XP_012071381.1
description PREDICTED: TMV resistance protein N-like [Jatropha curcas]
swissprot
ID O82500
description Putative disease resistance protein At4g11170 OS=Arabidopsis thaliana GN=At4g11170 PE=2 SV=1
trembl
ID A0A067KV39
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04985 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000879_100 0.0 desease resistance Gene Name: NB-ARC PREDICTED: TMV resistance protein N-like [Jatropha curcas]
2 Hb_005643_010 0.0573296518 transcription factor TF Family: ERF DNA binding protein, putative [Ricinus communis]
3 Hb_119441_010 0.0600435343 - - hypothetical protein CISIN_1g0477971mg, partial [Citrus sinensis]
4 Hb_000369_150 0.0685128899 desease resistance Gene Name: NB-ARC hypothetical protein JCGZ_20185 [Jatropha curcas]
5 Hb_001331_050 0.0775188207 - - hypothetical protein VITISV_022439 [Vitis vinifera]
6 Hb_066262_010 0.0936489195 - - hypothetical protein JCGZ_14798 [Jatropha curcas]
7 Hb_003847_140 0.0971374564 - - PREDICTED: short-chain dehydrogenase TIC 32, chloroplastic [Jatropha curcas]
8 Hb_005163_010 0.100071545 - - PREDICTED: probable terpene synthase 11 [Jatropha curcas]
9 Hb_004059_010 0.1012763193 - - PREDICTED: ankyrin repeat-containing protein At5g02620-like [Jatropha curcas]
10 Hb_000656_360 0.1047465637 - - PREDICTED: cytochrome P450 71A1-like [Jatropha curcas]
11 Hb_011924_030 0.1061791552 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
12 Hb_004098_010 0.1141450782 - - -
13 Hb_023827_010 0.1147968682 - - Cucumber peeling cupredoxin, putative [Ricinus communis]
14 Hb_004656_030 0.1172112189 - - putative pectin methylesterase family protein [Populus trichocarpa]
15 Hb_000277_020 0.1176781369 - - hypothetical protein JCGZ_08656 [Jatropha curcas]
16 Hb_010368_040 0.1178822485 - - conserved hypothetical protein [Ricinus communis]
17 Hb_009740_010 0.1263273794 - - receptor-kinase, putative [Ricinus communis]
18 Hb_176149_010 0.1283650568 - - hypothetical protein JCGZ_16793 [Jatropha curcas]
19 Hb_001190_020 0.1309001323 - - ankyrin repeat-containing protein, putative [Ricinus communis]
20 Hb_064855_010 0.1319162996 - - ankyrin repeat-containing protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_000879_100 Hb_000879_100 Hb_005643_010 Hb_005643_010 Hb_000879_100--Hb_005643_010 Hb_119441_010 Hb_119441_010 Hb_000879_100--Hb_119441_010 Hb_000369_150 Hb_000369_150 Hb_000879_100--Hb_000369_150 Hb_001331_050 Hb_001331_050 Hb_000879_100--Hb_001331_050 Hb_066262_010 Hb_066262_010 Hb_000879_100--Hb_066262_010 Hb_003847_140 Hb_003847_140 Hb_000879_100--Hb_003847_140 Hb_005643_010--Hb_001331_050 Hb_005643_010--Hb_119441_010 Hb_005643_010--Hb_000369_150 Hb_005643_010--Hb_066262_010 Hb_000277_020 Hb_000277_020 Hb_005643_010--Hb_000277_020 Hb_119441_010--Hb_000369_150 Hb_119441_010--Hb_001331_050 Hb_004098_010 Hb_004098_010 Hb_119441_010--Hb_004098_010 Hb_000128_010 Hb_000128_010 Hb_119441_010--Hb_000128_010 Hb_000369_150--Hb_004098_010 Hb_000369_150--Hb_000128_010 Hb_176149_010 Hb_176149_010 Hb_000369_150--Hb_176149_010 Hb_001331_050--Hb_000369_150 Hb_045810_010 Hb_045810_010 Hb_001331_050--Hb_045810_010 Hb_006351_080 Hb_006351_080 Hb_001331_050--Hb_006351_080 Hb_066262_010--Hb_003847_140 Hb_000656_360 Hb_000656_360 Hb_066262_010--Hb_000656_360 Hb_000233_060 Hb_000233_060 Hb_066262_010--Hb_000233_060 Hb_066262_010--Hb_119441_010 Hb_003847_140--Hb_000656_360 Hb_008707_020 Hb_008707_020 Hb_003847_140--Hb_008707_020 Hb_005081_060 Hb_005081_060 Hb_003847_140--Hb_005081_060 Hb_011924_030 Hb_011924_030 Hb_003847_140--Hb_011924_030 Hb_029866_140 Hb_029866_140 Hb_003847_140--Hb_029866_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 1.14005 0 0.0619587 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0841722 0

CAGE analysis