Hb_000879_140

Information

Type -
Description -
Location Contig879: 198513-199598
Sequence    

Annotation

kegg
ID rcu:RCOM_1587050
description hypothetical protein
nr
ID XP_012068205.1
description PREDICTED: uncharacterized protein DDB_G0283697-like isoform X2 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KZJ6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16014 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_61348: 195867-199697 , PASA_asmbl_61351: 197467-198594
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000879_140 0.0 - - PREDICTED: uncharacterized protein DDB_G0283697-like isoform X2 [Jatropha curcas]
2 Hb_000300_280 0.0567155461 - - PREDICTED: BTB/POZ and MATH domain-containing protein 4 isoform X1 [Jatropha curcas]
3 Hb_004310_060 0.0628940183 - - PREDICTED: protein VASCULAR ASSOCIATED DEATH 1, chloroplastic isoform X2 [Jatropha curcas]
4 Hb_000803_300 0.0690850708 - - nuclear movement protein nudc, putative [Ricinus communis]
5 Hb_000645_150 0.073968994 - - zinc finger protein, putative [Ricinus communis]
6 Hb_000236_320 0.0777110746 - - PREDICTED: ER membrane protein complex subunit 8/9 homolog [Jatropha curcas]
7 Hb_007590_080 0.0790984927 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP19-4 [Malus domestica]
8 Hb_026099_010 0.0795506894 - - PREDICTED: E3 ubiquitin-protein ligase RHF2A isoform X2 [Jatropha curcas]
9 Hb_007894_140 0.0803826605 - - PREDICTED: polyadenylate-binding protein-interacting protein 4 [Jatropha curcas]
10 Hb_000483_360 0.0824406114 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 26 [Jatropha curcas]
11 Hb_003728_030 0.0828948185 - - o-sialoglycoprotein endopeptidase, putative [Ricinus communis]
12 Hb_002007_350 0.0845734825 - - PREDICTED: mitochondrial Rho GTPase 1-like [Jatropha curcas]
13 Hb_000373_270 0.0860810606 transcription factor TF Family: bZIP PREDICTED: G-box-binding factor 4 isoform X1 [Jatropha curcas]
14 Hb_002400_180 0.0872498564 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000342_110 0.0884109459 - - PREDICTED: uncharacterized protein LOC105638174 [Jatropha curcas]
16 Hb_006663_100 0.0888249145 - - hypothetical protein JCGZ_06980 [Jatropha curcas]
17 Hb_002097_090 0.089445585 - - Splicing factor 3A subunit, putative [Ricinus communis]
18 Hb_003728_020 0.0897565065 - - conserved hypothetical protein [Ricinus communis]
19 Hb_001811_150 0.0900277957 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 28-like isoform X2 [Jatropha curcas]
20 Hb_001226_180 0.0904352357 - - peptidyl-prolyl cis-trans isomerase, putative [Ricinus communis]

Gene co-expression network

sample Hb_000879_140 Hb_000879_140 Hb_000300_280 Hb_000300_280 Hb_000879_140--Hb_000300_280 Hb_004310_060 Hb_004310_060 Hb_000879_140--Hb_004310_060 Hb_000803_300 Hb_000803_300 Hb_000879_140--Hb_000803_300 Hb_000645_150 Hb_000645_150 Hb_000879_140--Hb_000645_150 Hb_000236_320 Hb_000236_320 Hb_000879_140--Hb_000236_320 Hb_007590_080 Hb_007590_080 Hb_000879_140--Hb_007590_080 Hb_000300_280--Hb_004310_060 Hb_000370_030 Hb_000370_030 Hb_000300_280--Hb_000370_030 Hb_003728_030 Hb_003728_030 Hb_000300_280--Hb_003728_030 Hb_000184_130 Hb_000184_130 Hb_000300_280--Hb_000184_130 Hb_000373_270 Hb_000373_270 Hb_000300_280--Hb_000373_270 Hb_005147_110 Hb_005147_110 Hb_004310_060--Hb_005147_110 Hb_008725_250 Hb_008725_250 Hb_004310_060--Hb_008725_250 Hb_005914_230 Hb_005914_230 Hb_004310_060--Hb_005914_230 Hb_018663_020 Hb_018663_020 Hb_004310_060--Hb_018663_020 Hb_002097_090 Hb_002097_090 Hb_000803_300--Hb_002097_090 Hb_002400_180 Hb_002400_180 Hb_000803_300--Hb_002400_180 Hb_000522_090 Hb_000522_090 Hb_000803_300--Hb_000522_090 Hb_005245_130 Hb_005245_130 Hb_000803_300--Hb_005245_130 Hb_009265_080 Hb_009265_080 Hb_000803_300--Hb_009265_080 Hb_000139_250 Hb_000139_250 Hb_000803_300--Hb_000139_250 Hb_000236_370 Hb_000236_370 Hb_000645_150--Hb_000236_370 Hb_000645_150--Hb_002097_090 Hb_006913_040 Hb_006913_040 Hb_000645_150--Hb_006913_040 Hb_012305_070 Hb_012305_070 Hb_000645_150--Hb_012305_070 Hb_000186_280 Hb_000186_280 Hb_000645_150--Hb_000186_280 Hb_001829_010 Hb_001829_010 Hb_000645_150--Hb_001829_010 Hb_000236_320--Hb_018663_020 Hb_000236_320--Hb_012305_070 Hb_000236_320--Hb_005914_230 Hb_003384_030 Hb_003384_030 Hb_000236_320--Hb_003384_030 Hb_003453_020 Hb_003453_020 Hb_000236_320--Hb_003453_020 Hb_000236_320--Hb_004310_060 Hb_007336_020 Hb_007336_020 Hb_007590_080--Hb_007336_020 Hb_002007_350 Hb_002007_350 Hb_007590_080--Hb_002007_350 Hb_007894_140 Hb_007894_140 Hb_007590_080--Hb_007894_140 Hb_008253_010 Hb_008253_010 Hb_007590_080--Hb_008253_010 Hb_000100_070 Hb_000100_070 Hb_007590_080--Hb_000100_070 Hb_007590_080--Hb_000803_300
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
156.31 58.4765 25.4039 31.3143 142.609 120.63
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
119.24 67.7222 62.9464 69.3086 26.9604

CAGE analysis