Hb_000879_160

Information

Type -
Description -
Location Contig879: 209250-212391
Sequence    

Annotation

kegg
ID rcu:RCOM_1587300
description hypothetical protein
nr
ID XP_012068209.1
description PREDICTED: F-box protein At3g12350 isoform X1 [Jatropha curcas]
swissprot
ID Q84WW1
description F-box protein At3g12350 OS=Arabidopsis thaliana GN=At3g12350 PE=2 SV=1
trembl
ID A0A067KZH9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16018 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_61352: 210386-212652
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000879_160 0.0 - - PREDICTED: F-box protein At3g12350 isoform X1 [Jatropha curcas]
2 Hb_000935_090 0.0725815559 - - PREDICTED: putative nuclear matrix constituent protein 1-like protein [Jatropha curcas]
3 Hb_000046_070 0.0751919093 transcription factor TF Family: SBP Squamosa promoter-binding protein, putative [Ricinus communis]
4 Hb_000796_190 0.0861496038 - - hypothetical protein F383_31148 [Gossypium arboreum]
5 Hb_004429_160 0.088057777 - - PREDICTED: serine/threonine-protein kinase TAO3 isoform X1 [Jatropha curcas]
6 Hb_000025_650 0.0882026472 - - exosome complex exonuclease rrp45, putative [Ricinus communis]
7 Hb_007558_120 0.0910709644 transcription factor TF Family: IWS1 transcription elongation factor s-II, putative [Ricinus communis]
8 Hb_001493_040 0.0911536679 - - PREDICTED: FACT complex subunit SPT16-like [Jatropha curcas]
9 Hb_002174_020 0.0915262788 - - ring finger protein, putative [Ricinus communis]
10 Hb_002422_050 0.0933221256 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 5 isoform X1 [Jatropha curcas]
11 Hb_000152_260 0.0951375802 - - PREDICTED: cleavage and polyadenylation specificity factor subunit 1 [Jatropha curcas]
12 Hb_000109_100 0.0967559198 - - PREDICTED: poly [ADP-ribose] polymerase 1 [Jatropha curcas]
13 Hb_000044_040 0.0973791465 - - PREDICTED: KH domain-containing protein At4g18375-like [Jatropha curcas]
14 Hb_002078_100 0.0975542672 - - PREDICTED: mannosyl-oligosaccharide glucosidase GCS1-like [Jatropha curcas]
15 Hb_000139_230 0.0978583898 transcription factor TF Family: SNF2 PREDICTED: probable ATP-dependent DNA helicase CHR12 [Jatropha curcas]
16 Hb_029904_020 0.0982617608 - - hypothetical protein JCGZ_06227 [Jatropha curcas]
17 Hb_004453_110 0.0988649239 - - Peptidyl-prolyl cis-trans isomerase CYP19-2 isoform 1 [Theobroma cacao]
18 Hb_000160_290 0.0997040464 - - unnamed protein product [Vitis vinifera]
19 Hb_001143_250 0.0998686187 - - PREDICTED: SWI/SNF complex subunit SWI3C isoform X1 [Jatropha curcas]
20 Hb_000786_040 0.1004057512 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 17 [Jatropha curcas]

Gene co-expression network

sample Hb_000879_160 Hb_000879_160 Hb_000935_090 Hb_000935_090 Hb_000879_160--Hb_000935_090 Hb_000046_070 Hb_000046_070 Hb_000879_160--Hb_000046_070 Hb_000796_190 Hb_000796_190 Hb_000879_160--Hb_000796_190 Hb_004429_160 Hb_004429_160 Hb_000879_160--Hb_004429_160 Hb_000025_650 Hb_000025_650 Hb_000879_160--Hb_000025_650 Hb_007558_120 Hb_007558_120 Hb_000879_160--Hb_007558_120 Hb_001178_150 Hb_001178_150 Hb_000935_090--Hb_001178_150 Hb_001493_040 Hb_001493_040 Hb_000935_090--Hb_001493_040 Hb_001417_050 Hb_001417_050 Hb_000935_090--Hb_001417_050 Hb_000935_090--Hb_000796_190 Hb_000935_090--Hb_000025_650 Hb_000935_090--Hb_004429_160 Hb_002081_120 Hb_002081_120 Hb_000046_070--Hb_002081_120 Hb_001147_110 Hb_001147_110 Hb_000046_070--Hb_001147_110 Hb_001033_050 Hb_001033_050 Hb_000046_070--Hb_001033_050 Hb_004668_060 Hb_004668_060 Hb_000046_070--Hb_004668_060 Hb_000780_170 Hb_000780_170 Hb_000046_070--Hb_000780_170 Hb_000796_190--Hb_007558_120 Hb_003124_130 Hb_003124_130 Hb_000796_190--Hb_003124_130 Hb_000329_130 Hb_000329_130 Hb_000796_190--Hb_000329_130 Hb_002174_020 Hb_002174_020 Hb_000796_190--Hb_002174_020 Hb_000300_360 Hb_000300_360 Hb_000796_190--Hb_000300_360 Hb_001454_320 Hb_001454_320 Hb_000796_190--Hb_001454_320 Hb_000191_130 Hb_000191_130 Hb_004429_160--Hb_000191_130 Hb_003040_020 Hb_003040_020 Hb_004429_160--Hb_003040_020 Hb_000032_010 Hb_000032_010 Hb_004429_160--Hb_000032_010 Hb_001307_080 Hb_001307_080 Hb_004429_160--Hb_001307_080 Hb_000062_470 Hb_000062_470 Hb_004429_160--Hb_000062_470 Hb_000347_570 Hb_000347_570 Hb_000025_650--Hb_000347_570 Hb_000025_650--Hb_001178_150 Hb_017895_020 Hb_017895_020 Hb_000025_650--Hb_017895_020 Hb_000031_290 Hb_000031_290 Hb_000025_650--Hb_000031_290 Hb_000025_650--Hb_004429_160 Hb_003680_230 Hb_003680_230 Hb_007558_120--Hb_003680_230 Hb_007558_120--Hb_000329_130 Hb_006816_050 Hb_006816_050 Hb_007558_120--Hb_006816_050 Hb_004635_050 Hb_004635_050 Hb_007558_120--Hb_004635_050 Hb_002042_140 Hb_002042_140 Hb_007558_120--Hb_002042_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
20.3118 15.3259 9.33154 12.0794 16.6244 17.1908
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.23712 4.92939 4.04857 10.0661 12.6509

CAGE analysis