Hb_000879_190

Information

Type -
Description -
Location Contig879: 225554-226297
Sequence    

Annotation

kegg
ID rcu:RCOM_1587340
description hypothetical protein
nr
ID XP_002510090.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9R6Z7
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1587340 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000879_190 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000165_210 0.173101314 - - PREDICTED: trihelix transcription factor ASIL2 isoform X2 [Jatropha curcas]
3 Hb_000061_090 0.1872076569 - - hypothetical protein B456_003G0981001, partial [Gossypium raimondii]
4 Hb_000414_110 0.2024297909 - - PREDICTED: MATE efflux family protein 5 isoform X1 [Populus euphratica]
5 Hb_004800_170 0.202547822 - - PREDICTED: cytochrome P450 90B1 [Jatropha curcas]
6 Hb_158092_060 0.207317573 - - aspartate semialdehyde dehydrogenase, putative [Ricinus communis]
7 Hb_001699_200 0.2076030252 - - PREDICTED: chaperone protein dnaJ 11, chloroplastic [Jatropha curcas]
8 Hb_003947_040 0.210288507 - - Leucine-rich repeat transmembrane protein kinase protein, putative [Theobroma cacao]
9 Hb_004976_050 0.2140540559 - - -
10 Hb_000853_060 0.2174948385 - - PREDICTED: myelin transcription factor 1-like isoform X1 [Jatropha curcas]
11 Hb_000116_590 0.2214802133 - - PREDICTED: splicing factor, suppressor of white-apricot homolog [Malus domestica]
12 Hb_000120_390 0.2227960822 - - PREDICTED: uncharacterized transporter YBR287W-like [Jatropha curcas]
13 Hb_001776_190 0.2249680575 - - PREDICTED: protein kinase 2A, chloroplastic-like [Jatropha curcas]
14 Hb_007423_020 0.2275906777 - - 2-nitropropane dioxygenase precursor, putative [Ricinus communis]
15 Hb_094437_060 0.2276429376 - - PREDICTED: cytochrome B5 isoform D-like [Jatropha curcas]
16 Hb_002539_020 0.228396603 - - hypothetical protein CISIN_1g007216mg [Citrus sinensis]
17 Hb_001004_100 0.2292263473 - - ATP binding protein, putative [Ricinus communis]
18 Hb_001355_130 0.2297777462 - - PREDICTED: uncharacterized protein LOC105137896 [Populus euphratica]
19 Hb_000753_250 0.2300464375 - - PREDICTED: uncharacterized protein LOC105640661 [Jatropha curcas]
20 Hb_000011_290 0.2306620237 - - PREDICTED: alanine aminotransferase 2-like [Jatropha curcas]

Gene co-expression network

sample Hb_000879_190 Hb_000879_190 Hb_000165_210 Hb_000165_210 Hb_000879_190--Hb_000165_210 Hb_000061_090 Hb_000061_090 Hb_000879_190--Hb_000061_090 Hb_000414_110 Hb_000414_110 Hb_000879_190--Hb_000414_110 Hb_004800_170 Hb_004800_170 Hb_000879_190--Hb_004800_170 Hb_158092_060 Hb_158092_060 Hb_000879_190--Hb_158092_060 Hb_001699_200 Hb_001699_200 Hb_000879_190--Hb_001699_200 Hb_000853_060 Hb_000853_060 Hb_000165_210--Hb_000853_060 Hb_000120_390 Hb_000120_390 Hb_000165_210--Hb_000120_390 Hb_000165_210--Hb_000414_110 Hb_001206_090 Hb_001206_090 Hb_000165_210--Hb_001206_090 Hb_002304_140 Hb_002304_140 Hb_000165_210--Hb_002304_140 Hb_000061_090--Hb_000414_110 Hb_007423_020 Hb_007423_020 Hb_000061_090--Hb_007423_020 Hb_000011_290 Hb_000011_290 Hb_000061_090--Hb_000011_290 Hb_003947_040 Hb_003947_040 Hb_000061_090--Hb_003947_040 Hb_002539_020 Hb_002539_020 Hb_000061_090--Hb_002539_020 Hb_000417_320 Hb_000417_320 Hb_000414_110--Hb_000417_320 Hb_028811_010 Hb_028811_010 Hb_000414_110--Hb_028811_010 Hb_000808_170 Hb_000808_170 Hb_000414_110--Hb_000808_170 Hb_002291_010 Hb_002291_010 Hb_000414_110--Hb_002291_010 Hb_002918_230 Hb_002918_230 Hb_004800_170--Hb_002918_230 Hb_000975_150 Hb_000975_150 Hb_004800_170--Hb_000975_150 Hb_024621_030 Hb_024621_030 Hb_004800_170--Hb_024621_030 Hb_002006_140 Hb_002006_140 Hb_004800_170--Hb_002006_140 Hb_000056_330 Hb_000056_330 Hb_004800_170--Hb_000056_330 Hb_001004_100 Hb_001004_100 Hb_158092_060--Hb_001004_100 Hb_000675_060 Hb_000675_060 Hb_158092_060--Hb_000675_060 Hb_000471_080 Hb_000471_080 Hb_158092_060--Hb_000471_080 Hb_000922_010 Hb_000922_010 Hb_158092_060--Hb_000922_010 Hb_009545_010 Hb_009545_010 Hb_158092_060--Hb_009545_010 Hb_002471_260 Hb_002471_260 Hb_158092_060--Hb_002471_260 Hb_001699_200--Hb_000011_290 Hb_000614_170 Hb_000614_170 Hb_001699_200--Hb_000614_170 Hb_000320_300 Hb_000320_300 Hb_001699_200--Hb_000320_300 Hb_100147_010 Hb_100147_010 Hb_001699_200--Hb_100147_010 Hb_005873_010 Hb_005873_010 Hb_001699_200--Hb_005873_010 Hb_001971_060 Hb_001971_060 Hb_001699_200--Hb_001971_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0645458 0.728714 1.03396 0.659716 0.0648491 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.26474 0.935866 0.840485 5.57857 0.582582

CAGE analysis