Hb_000879_200

Information

Type -
Description -
Location Contig879: 228396-231870
Sequence    

Annotation

kegg
ID rcu:RCOM_1587350
description hypothetical protein
nr
ID XP_012068215.1
description PREDICTED: A-kinase anchor protein 17A [Jatropha curcas]
swissprot
ID A2A3V1
description A-kinase anchor protein 17B OS=Mus musculus GN=Akap17b PE=1 SV=2
trembl
ID A0A067LAT8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16022 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_61361: 228497-231785
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000879_200 0.0 - - PREDICTED: A-kinase anchor protein 17A [Jatropha curcas]
2 Hb_001926_030 0.0472283581 - - PREDICTED: apoptosis inhibitor 5 [Jatropha curcas]
3 Hb_006620_020 0.0499105802 - - PREDICTED: uncharacterized protein LOC105638878 [Jatropha curcas]
4 Hb_001595_030 0.0549076678 - - PREDICTED: nuclear inhibitor of protein phosphatase 1 isoform X1 [Jatropha curcas]
5 Hb_000853_230 0.0551850985 - - syntaxin, putative [Ricinus communis]
6 Hb_002518_280 0.0560226292 - - phosphate transporter [Manihot esculenta]
7 Hb_023386_020 0.0563194857 - - PREDICTED: chaperone protein dnaJ 13 isoform X2 [Jatropha curcas]
8 Hb_033720_010 0.0591977795 - - PREDICTED: uncharacterized protein LOC105648843 [Jatropha curcas]
9 Hb_000038_170 0.0597132652 - - PREDICTED: SCY1-like protein 2 [Jatropha curcas]
10 Hb_007317_110 0.0598185752 - - PREDICTED: uncharacterized RNA-binding protein C660.15-like [Jatropha curcas]
11 Hb_000926_190 0.0614150342 - - PREDICTED: 1,4-alpha-glucan-branching enzyme 3, chloroplastic/amyloplastic isoform X2 [Jatropha curcas]
12 Hb_000498_010 0.0626318711 - - PREDICTED: protease Do-like 10, mitochondrial isoform X1 [Jatropha curcas]
13 Hb_001258_090 0.0638921726 - - PREDICTED: protein spt2-like [Jatropha curcas]
14 Hb_001493_030 0.0649386845 - - hypothetical protein MIMGU_mgv1a005351mg [Erythranthe guttata]
15 Hb_004055_150 0.0656433666 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000618_030 0.0659245615 - - PREDICTED: serine/threonine-protein kinase TOUSLED-like isoform X4 [Populus euphratica]
17 Hb_000152_380 0.0665170988 - - PREDICTED: hypersensitive-induced response protein 4 [Jatropha curcas]
18 Hb_003025_110 0.0671865433 - - PREDICTED: serine/threonine-protein kinase HT1 isoform X1 [Jatropha curcas]
19 Hb_156973_010 0.0672327672 - - conserved hypothetical protein [Ricinus communis]
20 Hb_006252_040 0.0679072934 - - queuine tRNA-ribosyltransferase, putative [Ricinus communis]

Gene co-expression network

sample Hb_000879_200 Hb_000879_200 Hb_001926_030 Hb_001926_030 Hb_000879_200--Hb_001926_030 Hb_006620_020 Hb_006620_020 Hb_000879_200--Hb_006620_020 Hb_001595_030 Hb_001595_030 Hb_000879_200--Hb_001595_030 Hb_000853_230 Hb_000853_230 Hb_000879_200--Hb_000853_230 Hb_002518_280 Hb_002518_280 Hb_000879_200--Hb_002518_280 Hb_023386_020 Hb_023386_020 Hb_000879_200--Hb_023386_020 Hb_004055_150 Hb_004055_150 Hb_001926_030--Hb_004055_150 Hb_002686_250 Hb_002686_250 Hb_001926_030--Hb_002686_250 Hb_001926_030--Hb_006620_020 Hb_001926_030--Hb_000853_230 Hb_000010_400 Hb_000010_400 Hb_001926_030--Hb_000010_400 Hb_006620_020--Hb_000853_230 Hb_006620_020--Hb_004055_150 Hb_054865_100 Hb_054865_100 Hb_006620_020--Hb_054865_100 Hb_000174_110 Hb_000174_110 Hb_006620_020--Hb_000174_110 Hb_036790_100 Hb_036790_100 Hb_001595_030--Hb_036790_100 Hb_000038_170 Hb_000038_170 Hb_001595_030--Hb_000038_170 Hb_000327_120 Hb_000327_120 Hb_001595_030--Hb_000327_120 Hb_002603_120 Hb_002603_120 Hb_001595_030--Hb_002603_120 Hb_006185_050 Hb_006185_050 Hb_001595_030--Hb_006185_050 Hb_000853_230--Hb_004055_150 Hb_000390_180 Hb_000390_180 Hb_000853_230--Hb_000390_180 Hb_033720_010 Hb_033720_010 Hb_000853_230--Hb_033720_010 Hb_002518_280--Hb_000038_170 Hb_002518_280--Hb_023386_020 Hb_010618_010 Hb_010618_010 Hb_002518_280--Hb_010618_010 Hb_000152_380 Hb_000152_380 Hb_002518_280--Hb_000152_380 Hb_004310_150 Hb_004310_150 Hb_002518_280--Hb_004310_150 Hb_004100_080 Hb_004100_080 Hb_023386_020--Hb_004100_080 Hb_000926_190 Hb_000926_190 Hb_023386_020--Hb_000926_190 Hb_023386_020--Hb_033720_010 Hb_156973_010 Hb_156973_010 Hb_023386_020--Hb_156973_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
37.7959 23.5223 23.618 17.0402 39.8017 42.4128
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
29.6782 29.3177 28.4163 21.8833 19.8996

CAGE analysis