Hb_000879_230

Information

Type -
Description -
Location Contig879: 242007-254592
Sequence    

Annotation

kegg
ID pop:POPTR_0014s01630g
description POPTRDRAFT_572035; NO POLLEN GERMINATION RELATED 1 family protein
nr
ID XP_012068218.1
description PREDICTED: tetratricopeptide repeat protein 7A [Jatropha curcas]
swissprot
ID Q86TV6
description Tetratricopeptide repeat protein 7B OS=Homo sapiens GN=TTC7B PE=1 SV=3
trembl
ID A0A067L318
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16025 PE=4 SV=1
Gene Ontology
ID GO:0005886
description tetratricopeptide repeat protein 7b-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_61363: 243652-244133
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000879_230 0.0 - - PREDICTED: tetratricopeptide repeat protein 7A [Jatropha curcas]
2 Hb_000176_010 0.1511717801 - - PREDICTED: 50S ribosomal protein L35, chloroplastic [Jatropha curcas]
3 Hb_009780_050 0.1519096522 - - PREDICTED: glutathione S-transferase DHAR3, chloroplastic [Jatropha curcas]
4 Hb_027298_010 0.1591165813 - - conserved hypothetical protein [Ricinus communis]
5 Hb_001307_110 0.1594907569 - - PREDICTED: uncharacterized protein LOC105644507 [Jatropha curcas]
6 Hb_003181_060 0.1718068845 - - PREDICTED: triosephosphate isomerase, cytosolic [Jatropha curcas]
7 Hb_001450_030 0.1728182857 - - PREDICTED: uncharacterized protein LOC105650827 [Jatropha curcas]
8 Hb_000365_370 0.1798070362 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000723_290 0.1837906465 - - calcium lipid binding protein, putative [Ricinus communis]
10 Hb_019762_050 0.1848045923 transcription factor TF Family: CSD PREDICTED: glycine-rich protein 2-like [Jatropha curcas]
11 Hb_007632_170 0.1869589005 - - hypothetical protein JCGZ_01028 [Jatropha curcas]
12 Hb_065525_120 0.1876048926 - - dtdp-glucose 4-6-dehydratase, putative [Ricinus communis]
13 Hb_002374_300 0.1878248819 - - hypothetical protein JCGZ_12140 [Jatropha curcas]
14 Hb_001269_470 0.19672371 - - PREDICTED: uncharacterized protein LOC105630313 [Jatropha curcas]
15 Hb_052764_070 0.1995678108 - - PREDICTED: uncharacterized protein LOC105649473 [Jatropha curcas]
16 Hb_004317_030 0.1996287015 - - PREDICTED: protein CHROMOSOME TRANSMISSION FIDELITY 7 [Jatropha curcas]
17 Hb_000032_370 0.200077662 - - PREDICTED: nucleoside diphosphate kinase III, chloroplastic/mitochondrial-like [Citrus sinensis]
18 Hb_000167_050 0.2004002435 - - PREDICTED: uncharacterized protein LOC105641106 [Jatropha curcas]
19 Hb_004024_020 0.2005169217 - - ankyrin repeat-containing protein, putative [Ricinus communis]
20 Hb_005846_030 0.2010547831 - - PREDICTED: 50S ribosomal protein L29, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_000879_230 Hb_000879_230 Hb_000176_010 Hb_000176_010 Hb_000879_230--Hb_000176_010 Hb_009780_050 Hb_009780_050 Hb_000879_230--Hb_009780_050 Hb_027298_010 Hb_027298_010 Hb_000879_230--Hb_027298_010 Hb_001307_110 Hb_001307_110 Hb_000879_230--Hb_001307_110 Hb_003181_060 Hb_003181_060 Hb_000879_230--Hb_003181_060 Hb_001450_030 Hb_001450_030 Hb_000879_230--Hb_001450_030 Hb_000176_010--Hb_009780_050 Hb_001124_180 Hb_001124_180 Hb_000176_010--Hb_001124_180 Hb_000627_300 Hb_000627_300 Hb_000176_010--Hb_000627_300 Hb_000042_290 Hb_000042_290 Hb_000176_010--Hb_000042_290 Hb_002150_130 Hb_002150_130 Hb_000176_010--Hb_002150_130 Hb_000167_050 Hb_000167_050 Hb_000176_010--Hb_000167_050 Hb_001711_120 Hb_001711_120 Hb_009780_050--Hb_001711_120 Hb_009780_050--Hb_000167_050 Hb_065525_120 Hb_065525_120 Hb_009780_050--Hb_065525_120 Hb_002053_010 Hb_002053_010 Hb_009780_050--Hb_002053_010 Hb_009780_050--Hb_001124_180 Hb_019762_050 Hb_019762_050 Hb_027298_010--Hb_019762_050 Hb_000392_550 Hb_000392_550 Hb_027298_010--Hb_000392_550 Hb_000032_370 Hb_000032_370 Hb_027298_010--Hb_000032_370 Hb_027298_010--Hb_065525_120 Hb_140627_010 Hb_140627_010 Hb_027298_010--Hb_140627_010 Hb_027298_010--Hb_009780_050 Hb_001307_110--Hb_065525_120 Hb_002320_080 Hb_002320_080 Hb_001307_110--Hb_002320_080 Hb_001307_110--Hb_009780_050 Hb_000365_370 Hb_000365_370 Hb_001307_110--Hb_000365_370 Hb_001307_110--Hb_000032_370 Hb_001269_470 Hb_001269_470 Hb_003181_060--Hb_001269_470 Hb_027298_030 Hb_027298_030 Hb_003181_060--Hb_027298_030 Hb_021079_010 Hb_021079_010 Hb_003181_060--Hb_021079_010 Hb_003181_060--Hb_027298_010 Hb_003181_060--Hb_001711_120 Hb_003181_060--Hb_000392_550 Hb_000008_370 Hb_000008_370 Hb_001450_030--Hb_000008_370 Hb_001767_060 Hb_001767_060 Hb_001450_030--Hb_001767_060 Hb_000390_090 Hb_000390_090 Hb_001450_030--Hb_000390_090 Hb_000152_210 Hb_000152_210 Hb_001450_030--Hb_000152_210 Hb_001450_030--Hb_000176_010 Hb_001450_030--Hb_003181_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.12996 0.518471 4.45817 5.72663 0.0753478 0.208436
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.86803 8.05291 1.98304 0.498765 7.89009

CAGE analysis