Hb_000879_260

Information

Type -
Description -
Location Contig879: 274586-276622
Sequence    

Annotation

kegg
ID pop:POPTR_0014s01650g
description POPTRDRAFT_897142; hypothetical protein
nr
ID XP_012068224.1
description PREDICTED: F-box/kelch-repeat protein At5g43190 [Jatropha curcas]
swissprot
ID Q9FHS6
description F-box/kelch-repeat protein At5g43190 OS=Arabidopsis thaliana GN=At5g43190 PE=2 SV=1
trembl
ID A0A067L324
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16030 PE=4 SV=1
Gene Ontology
ID GO:0044425
description f-box kelch-repeat protein at5g43190-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_61364: 275328-276877
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000879_260 0.0 - - PREDICTED: F-box/kelch-repeat protein At5g43190 [Jatropha curcas]
2 Hb_042463_030 0.1008093119 - - unknown [Lotus japonicus]
3 Hb_000373_140 0.1166871787 - - PREDICTED: uncharacterized protein LOC105160092 [Sesamum indicum]
4 Hb_101462_010 0.119943379 - - PREDICTED: probable receptor-like protein kinase At5g39030 isoform X2 [Jatropha curcas]
5 Hb_077242_020 0.1200132758 - - ribosomal protein S4 (mitochondrion) [Ricinus communis]
6 Hb_079902_010 0.1228294982 - - cytochrome c biogenesis B (mitochondrion) [Hevea brasiliensis]
7 Hb_001508_010 0.1276584352 - - conserved hypothetical protein [Ricinus communis]
8 Hb_006040_030 0.1300942705 - - hypothetical protein EUTSA_v10001274mg [Eutrema salsugineum]
9 Hb_041813_030 0.130690038 - - cytochrome oxidase subunit 1, partial (mitochondrion) [Calochone redingii]
10 Hb_000031_200 0.1351511281 - - PREDICTED: trifunctional UDP-glucose 4,6-dehydratase/UDP-4-keto-6-deoxy-D-glucose 3,5-epimerase/UDP-4-keto-L-rhamnose-reductase RHM3-like [Jatropha curcas]
11 Hb_042463_070 0.1359914595 - - 60S ribosomal protein L16, putative [Ricinus communis]
12 Hb_171685_060 0.141475738 - - PREDICTED: cytochrome c oxidase subunit 2 [Pyrus x bretschneideri]
13 Hb_000920_020 0.1417314004 - - OSJNBa0004L19.22 [Oryza sativa Japonica Group]
14 Hb_012163_050 0.1419776528 - - ATPase subunit [Medicago truncatula]
15 Hb_008918_030 0.1432004972 - - hypothetical protein POPTR_0001s08730g [Populus trichocarpa]
16 Hb_156746_010 0.1439696701 - - ATP synthase F1 subunit 1 (mitochondrion) [Hevea brasiliensis]
17 Hb_004208_040 0.1472186741 - - UDP-glycosyltransferase 86A1 [Morus notabilis]
18 Hb_002395_040 0.1497431412 - - unknown [Populus trichocarpa]
19 Hb_000123_070 0.1519720252 - - PREDICTED: terpene synthase 10-like [Jatropha curcas]
20 Hb_001490_020 0.1528127354 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]

Gene co-expression network

sample Hb_000879_260 Hb_000879_260 Hb_042463_030 Hb_042463_030 Hb_000879_260--Hb_042463_030 Hb_000373_140 Hb_000373_140 Hb_000879_260--Hb_000373_140 Hb_101462_010 Hb_101462_010 Hb_000879_260--Hb_101462_010 Hb_077242_020 Hb_077242_020 Hb_000879_260--Hb_077242_020 Hb_079902_010 Hb_079902_010 Hb_000879_260--Hb_079902_010 Hb_001508_010 Hb_001508_010 Hb_000879_260--Hb_001508_010 Hb_012163_050 Hb_012163_050 Hb_042463_030--Hb_012163_050 Hb_006040_030 Hb_006040_030 Hb_042463_030--Hb_006040_030 Hb_171685_060 Hb_171685_060 Hb_042463_030--Hb_171685_060 Hb_041813_030 Hb_041813_030 Hb_042463_030--Hb_041813_030 Hb_156746_010 Hb_156746_010 Hb_042463_030--Hb_156746_010 Hb_000373_140--Hb_101462_010 Hb_004208_040 Hb_004208_040 Hb_000373_140--Hb_004208_040 Hb_000373_140--Hb_079902_010 Hb_004987_040 Hb_004987_040 Hb_000373_140--Hb_004987_040 Hb_004375_020 Hb_004375_020 Hb_000373_140--Hb_004375_020 Hb_000123_070 Hb_000123_070 Hb_000373_140--Hb_000123_070 Hb_101462_010--Hb_000123_070 Hb_101462_010--Hb_004208_040 Hb_101462_010--Hb_079902_010 Hb_101462_010--Hb_004987_040 Hb_101462_010--Hb_004375_020 Hb_077242_020--Hb_041813_030 Hb_077242_020--Hb_006040_030 Hb_042463_070 Hb_042463_070 Hb_077242_020--Hb_042463_070 Hb_077242_020--Hb_079902_010 Hb_077242_020--Hb_101462_010 Hb_077242_020--Hb_156746_010 Hb_079902_010--Hb_001508_010 Hb_002395_040 Hb_002395_040 Hb_079902_010--Hb_002395_040 Hb_079902_010--Hb_004208_040 Hb_001508_010--Hb_000373_140 Hb_001508_010--Hb_101462_010 Hb_002553_030 Hb_002553_030 Hb_001508_010--Hb_002553_030 Hb_002551_030 Hb_002551_030 Hb_001508_010--Hb_002551_030 Hb_001508_010--Hb_077242_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0178157 1.18253 0.32964 0.44996 0.0166916 0.0187002
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0406922 0.288081 0.178613 0.320577 23.1161

CAGE analysis