Hb_000881_070

Information

Type -
Description -
Location Contig881: 132979-133683
Sequence    

Annotation

kegg
ID rcu:RCOM_0042390
description nucleic acid binding protein, putative
nr
ID XP_002531176.1
description nucleic acid binding protein, putative [Ricinus communis]
swissprot
ID Q84WI0
description Zinc finger protein GIS OS=Arabidopsis thaliana GN=GIS PE=2 SV=1
trembl
ID B9SYV7
description Nucleic acid binding protein, putative OS=Ricinus communis GN=RCOM_0042390 PE=4 SV=1
Gene Ontology
ID GO:0046872
description zinc finger protein 8-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_61436: 132841-133811
cDNA
(Sanger)
(ID:Location)		 010_K20.ab1: 132841-133460 , 016_H06.ab1: 132841-133616 , 035_P06.ab1: 132841-133620

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000881_070 0.0 - - nucleic acid binding protein, putative [Ricinus communis]
2 Hb_003020_120 0.0823367654 - - PREDICTED: protein TIC 62, chloroplastic [Populus euphratica]
3 Hb_003120_020 0.0836136154 desease resistance Gene Name: ABC_membrane PREDICTED: ABC transporter B family member 13-like [Prunus mume]
4 Hb_020648_030 0.0849291786 - - PREDICTED: long-chain-alcohol oxidase FAO1 [Jatropha curcas]
5 Hb_010326_020 0.0852885786 - - PREDICTED: thioredoxin-like 4, chloroplastic [Jatropha curcas]
6 Hb_002375_030 0.0937068907 - - F-box family protein [Populus trichocarpa]
7 Hb_001717_060 0.0950787186 - - PREDICTED: xylogen-like protein 11 [Gossypium raimondii]
8 Hb_001135_310 0.0963640184 - - Chlorophyll a-b binding protein 6A [Morus notabilis]
9 Hb_003632_020 0.0970786262 - - calcium-binding family protein [Populus trichocarpa]
10 Hb_000230_420 0.0980115375 - - GS [Hevea brasiliensis subsp. brasiliensis]
11 Hb_005280_020 0.099166843 - - glycine cleavage system h protein, putative [Ricinus communis]
12 Hb_011724_040 0.1001155286 - - PREDICTED: uncharacterized protein LOC105632860 [Jatropha curcas]
13 Hb_003038_060 0.102156069 - - hypothetical protein POPTR_0007s13050g [Populus trichocarpa]
14 Hb_000083_180 0.102276656 - - PREDICTED: probable 2-oxoglutarate/Fe(II)-dependent dioxygenase [Jatropha curcas]
15 Hb_005754_050 0.1031665117 - - PREDICTED: uncharacterized protein LOC105636679 [Jatropha curcas]
16 Hb_146225_020 0.1041520824 - - chlorophyll A/B binding protein, putative [Ricinus communis]
17 Hb_009193_020 0.1043707398 - - PREDICTED: epoxide hydrolase 3 [Jatropha curcas]
18 Hb_003602_100 0.1047050131 - - Glutamyl-tRNA reductase 1, chloroplast precursor, putative [Ricinus communis]
19 Hb_000948_240 0.1051447516 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000648_070 0.1062957082 - - PREDICTED: protein TIC 62, chloroplastic [Populus euphratica]

Gene co-expression network

sample Hb_000881_070 Hb_000881_070 Hb_003020_120 Hb_003020_120 Hb_000881_070--Hb_003020_120 Hb_003120_020 Hb_003120_020 Hb_000881_070--Hb_003120_020 Hb_020648_030 Hb_020648_030 Hb_000881_070--Hb_020648_030 Hb_010326_020 Hb_010326_020 Hb_000881_070--Hb_010326_020 Hb_002375_030 Hb_002375_030 Hb_000881_070--Hb_002375_030 Hb_001717_060 Hb_001717_060 Hb_000881_070--Hb_001717_060 Hb_000083_180 Hb_000083_180 Hb_003020_120--Hb_000083_180 Hb_013405_110 Hb_013405_110 Hb_003020_120--Hb_013405_110 Hb_004899_190 Hb_004899_190 Hb_003020_120--Hb_004899_190 Hb_000948_240 Hb_000948_240 Hb_003020_120--Hb_000948_240 Hb_003847_070 Hb_003847_070 Hb_003020_120--Hb_003847_070 Hb_002592_040 Hb_002592_040 Hb_003020_120--Hb_002592_040 Hb_000049_100 Hb_000049_100 Hb_003120_020--Hb_000049_100 Hb_000808_130 Hb_000808_130 Hb_003120_020--Hb_000808_130 Hb_003120_020--Hb_010326_020 Hb_001534_060 Hb_001534_060 Hb_003120_020--Hb_001534_060 Hb_003120_020--Hb_002375_030 Hb_020648_030--Hb_000083_180 Hb_020648_030--Hb_001717_060 Hb_003038_060 Hb_003038_060 Hb_020648_030--Hb_003038_060 Hb_005754_050 Hb_005754_050 Hb_020648_030--Hb_005754_050 Hb_020648_030--Hb_000948_240 Hb_003632_020 Hb_003632_020 Hb_010326_020--Hb_003632_020 Hb_011724_040 Hb_011724_040 Hb_010326_020--Hb_011724_040 Hb_010326_020--Hb_003020_120 Hb_000230_420 Hb_000230_420 Hb_010326_020--Hb_000230_420 Hb_000369_110 Hb_000369_110 Hb_010326_020--Hb_000369_110 Hb_010326_020--Hb_000049_100 Hb_008195_070 Hb_008195_070 Hb_002375_030--Hb_008195_070 Hb_001006_040 Hb_001006_040 Hb_002375_030--Hb_001006_040 Hb_001292_030 Hb_001292_030 Hb_002375_030--Hb_001292_030 Hb_001975_100 Hb_001975_100 Hb_002375_030--Hb_001975_100 Hb_000254_130 Hb_000254_130 Hb_002375_030--Hb_000254_130 Hb_002375_030--Hb_000049_100 Hb_001717_060--Hb_003038_060 Hb_001717_060--Hb_005754_050 Hb_000531_100 Hb_000531_100 Hb_001717_060--Hb_000531_100 Hb_005280_020 Hb_005280_020 Hb_001717_060--Hb_005280_020 Hb_013726_060 Hb_013726_060 Hb_001717_060--Hb_013726_060 Hb_002818_110 Hb_002818_110 Hb_001717_060--Hb_002818_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.45106 0.35213 18.7329 6.57973 0.130253 0.0307707
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0801086 0.188932 0.112464 0 25.5561

CAGE analysis