Hb_000881_080

Information

Type -
Description -
Location Contig881: 143375-147549
Sequence    

Annotation

kegg
ID rcu:RCOM_0042280
description hypothetical protein
nr
ID XP_002531175.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SYV6
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0042280 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_61438: 143348-147576
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000881_080 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_032260_030 0.0690635489 - - hypothetical protein POPTR_0001s10500g [Populus trichocarpa]
3 Hb_007304_070 0.0725638827 - - hypoxanthine-guanine phosphoribosyltransferase, putative [Ricinus communis]
4 Hb_000905_180 0.0785172502 - - 60S ribosomal protein L31A [Hevea brasiliensis]
5 Hb_001016_090 0.0798973548 - - PREDICTED: receptor homology region, transmembrane domain- and RING domain-containing protein 1 [Populus euphratica]
6 Hb_000236_150 0.0838959679 - - glycine-rich RNA-binding protein, putative [Ricinus communis]
7 Hb_001780_050 0.0849771799 - - PREDICTED: DNA-directed RNA polymerases I and III subunit RPAC2 [Jatropha curcas]
8 Hb_000331_700 0.0860237279 - - PREDICTED: uncharacterized protein LOC105640277 [Jatropha curcas]
9 Hb_000163_130 0.0884695563 - - hypothetical protein CICLE_v10022870mg [Citrus clementina]
10 Hb_000111_340 0.0896389407 - - peptidyl-prolyl cis-trans isomerase h, ppih, putative [Ricinus communis]
11 Hb_001085_270 0.0902423676 - - 60S ribosomal protein L13aA [Hevea brasiliensis]
12 Hb_002006_130 0.0906469798 - - PREDICTED: uncharacterized protein LOC105648712 [Jatropha curcas]
13 Hb_001017_070 0.0925173532 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000193_120 0.0929738564 - - PREDICTED: protein preY, mitochondrial [Jatropha curcas]
15 Hb_000115_230 0.0932164828 - - PREDICTED: cysteine--tRNA ligase, cytoplasmic-like [Jatropha curcas]
16 Hb_172221_010 0.0938791936 - - PREDICTED: 60S ribosomal protein L37-1 [Jatropha curcas]
17 Hb_004156_040 0.0940147361 - - PREDICTED: uncharacterized protein LOC105110611 [Populus euphratica]
18 Hb_003185_050 0.0941442256 - - PREDICTED: probable histone H2A variant 3 [Jatropha curcas]
19 Hb_000349_290 0.094208988 - - PREDICTED: zinc finger A20 and AN1 domain-containing stress-associated protein 1 [Jatropha curcas]
20 Hb_007944_040 0.0945154483 - - 60S ribosomal protein L18aB [Hevea brasiliensis]

Gene co-expression network

sample Hb_000881_080 Hb_000881_080 Hb_032260_030 Hb_032260_030 Hb_000881_080--Hb_032260_030 Hb_007304_070 Hb_007304_070 Hb_000881_080--Hb_007304_070 Hb_000905_180 Hb_000905_180 Hb_000881_080--Hb_000905_180 Hb_001016_090 Hb_001016_090 Hb_000881_080--Hb_001016_090 Hb_000236_150 Hb_000236_150 Hb_000881_080--Hb_000236_150 Hb_001780_050 Hb_001780_050 Hb_000881_080--Hb_001780_050 Hb_032260_030--Hb_001016_090 Hb_002925_030 Hb_002925_030 Hb_032260_030--Hb_002925_030 Hb_005883_100 Hb_005883_100 Hb_032260_030--Hb_005883_100 Hb_001863_090 Hb_001863_090 Hb_032260_030--Hb_001863_090 Hb_003398_120 Hb_003398_120 Hb_032260_030--Hb_003398_120 Hb_000111_340 Hb_000111_340 Hb_007304_070--Hb_000111_340 Hb_003053_030 Hb_003053_030 Hb_007304_070--Hb_003053_030 Hb_001633_030 Hb_001633_030 Hb_007304_070--Hb_001633_030 Hb_002431_050 Hb_002431_050 Hb_007304_070--Hb_002431_050 Hb_000365_080 Hb_000365_080 Hb_007304_070--Hb_000365_080 Hb_000163_130 Hb_000163_130 Hb_000905_180--Hb_000163_130 Hb_000905_180--Hb_000236_150 Hb_000905_180--Hb_001016_090 Hb_005474_060 Hb_005474_060 Hb_000905_180--Hb_005474_060 Hb_003185_050 Hb_003185_050 Hb_000905_180--Hb_003185_050 Hb_002374_390 Hb_002374_390 Hb_000905_180--Hb_002374_390 Hb_001016_090--Hb_002374_390 Hb_148200_010 Hb_148200_010 Hb_001016_090--Hb_148200_010 Hb_001016_090--Hb_002925_030 Hb_148930_010 Hb_148930_010 Hb_001016_090--Hb_148930_010 Hb_005914_200 Hb_005914_200 Hb_000236_150--Hb_005914_200 Hb_000236_150--Hb_001780_050 Hb_000224_090 Hb_000224_090 Hb_000236_150--Hb_000224_090 Hb_000236_150--Hb_000163_130 Hb_012539_020 Hb_012539_020 Hb_000236_150--Hb_012539_020 Hb_001780_050--Hb_000163_130 Hb_001780_050--Hb_005914_200 Hb_004754_070 Hb_004754_070 Hb_001780_050--Hb_004754_070 Hb_001780_050--Hb_012539_020 Hb_012395_130 Hb_012395_130 Hb_001780_050--Hb_012395_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
15.3233 14.532 10.1424 18.6237 22.6239 22.4471
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
66.1785 124.459 49.7327 27.262 14.4258

CAGE analysis