Hb_000883_040

Information

Type -
Description -
Location Contig883: 45056-55565
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000883_040 0.0 - - -
2 Hb_005714_030 0.2093616373 - - PREDICTED: COBRA-like protein 6 isoform X1 [Gossypium raimondii]
3 Hb_002234_190 0.2678199715 - - PREDICTED: putative non-specific lipid-transfer protein 14 [Jatropha curcas]
4 Hb_006132_020 0.2762026787 - - PREDICTED: U-box domain-containing protein 37-like isoform X1 [Populus euphratica]
5 Hb_003398_070 0.2787167523 transcription factor TF Family: GRAS PREDICTED: scarecrow-like protein 9 [Jatropha curcas]
6 Hb_002233_020 0.2841388454 - - hypothetical protein JCGZ_04974 [Jatropha curcas]
7 Hb_000002_270 0.2864040301 - - hypothetical protein VITISV_043897 [Vitis vinifera]
8 Hb_037767_010 0.2895605216 - - Protein kinase APK1B, chloroplast precursor, putative [Ricinus communis]
9 Hb_000676_040 0.2906299746 - - hypothetical protein POPTR_0007s13320g [Populus trichocarpa]
10 Hb_111985_040 0.2922470804 transcription factor TF Family: HB PREDICTED: BEL1-like homeodomain protein 3 [Jatropha curcas]
11 Hb_003544_070 0.2931969455 - - conserved hypothetical protein [Ricinus communis]
12 Hb_001860_010 0.2942976819 - - leucine-rich repeat receptor protein kinase exs precursor, putative [Ricinus communis]
13 Hb_007218_160 0.2949566516 - - PREDICTED: uncharacterized protein LOC105108358 [Populus euphratica]
14 Hb_001741_120 0.2956151951 - - hypothetical protein CARUB_v10011543mg, partial [Capsella rubella]
15 Hb_004648_050 0.2974684521 - - ring finger protein, putative [Ricinus communis]
16 Hb_000450_180 0.3000323349 - - Disease resistance protein RPS5, putative [Ricinus communis]
17 Hb_165080_010 0.3033350085 - - hypothetical protein JCGZ_01613 [Jatropha curcas]
18 Hb_000363_370 0.3043668222 - - PREDICTED: putative BPI/LBP family protein At1g04970 [Jatropha curcas]
19 Hb_062785_010 0.3048586871 - - Organic cation transporter, putative [Ricinus communis]
20 Hb_000856_020 0.3048704352 - - PREDICTED: probable beta-1,3-galactosyltransferase 19 [Jatropha curcas]

Gene co-expression network

sample Hb_000883_040 Hb_000883_040 Hb_005714_030 Hb_005714_030 Hb_000883_040--Hb_005714_030 Hb_002234_190 Hb_002234_190 Hb_000883_040--Hb_002234_190 Hb_006132_020 Hb_006132_020 Hb_000883_040--Hb_006132_020 Hb_003398_070 Hb_003398_070 Hb_000883_040--Hb_003398_070 Hb_002233_020 Hb_002233_020 Hb_000883_040--Hb_002233_020 Hb_000002_270 Hb_000002_270 Hb_000883_040--Hb_000002_270 Hb_007218_160 Hb_007218_160 Hb_005714_030--Hb_007218_160 Hb_002094_070 Hb_002094_070 Hb_005714_030--Hb_002094_070 Hb_001065_070 Hb_001065_070 Hb_005714_030--Hb_001065_070 Hb_002316_040 Hb_002316_040 Hb_005714_030--Hb_002316_040 Hb_001625_030 Hb_001625_030 Hb_005714_030--Hb_001625_030 Hb_073395_010 Hb_073395_010 Hb_002234_190--Hb_073395_010 Hb_037767_010 Hb_037767_010 Hb_002234_190--Hb_037767_010 Hb_006502_050 Hb_006502_050 Hb_002234_190--Hb_006502_050 Hb_081745_010 Hb_081745_010 Hb_002234_190--Hb_081745_010 Hb_002876_290 Hb_002876_290 Hb_002234_190--Hb_002876_290 Hb_001902_190 Hb_001902_190 Hb_002234_190--Hb_001902_190 Hb_000200_110 Hb_000200_110 Hb_006132_020--Hb_000200_110 Hb_001488_040 Hb_001488_040 Hb_006132_020--Hb_001488_040 Hb_001341_160 Hb_001341_160 Hb_006132_020--Hb_001341_160 Hb_002005_120 Hb_002005_120 Hb_006132_020--Hb_002005_120 Hb_006132_020--Hb_002233_020 Hb_000617_190 Hb_000617_190 Hb_006132_020--Hb_000617_190 Hb_065500_030 Hb_065500_030 Hb_003398_070--Hb_065500_030 Hb_003398_070--Hb_002005_120 Hb_003398_070--Hb_002233_020 Hb_003544_070 Hb_003544_070 Hb_003398_070--Hb_003544_070 Hb_000856_020 Hb_000856_020 Hb_003398_070--Hb_000856_020 Hb_002400_140 Hb_002400_140 Hb_003398_070--Hb_002400_140 Hb_000866_370 Hb_000866_370 Hb_002233_020--Hb_000866_370 Hb_000010_350 Hb_000010_350 Hb_002233_020--Hb_000010_350 Hb_089100_040 Hb_089100_040 Hb_002233_020--Hb_089100_040 Hb_001377_250 Hb_001377_250 Hb_002233_020--Hb_001377_250 Hb_003060_090 Hb_003060_090 Hb_002233_020--Hb_003060_090 Hb_111985_040 Hb_111985_040 Hb_000002_270--Hb_111985_040 Hb_000302_200 Hb_000302_200 Hb_000002_270--Hb_000302_200 Hb_000792_040 Hb_000792_040 Hb_000002_270--Hb_000792_040 Hb_000081_120 Hb_000081_120 Hb_000002_270--Hb_000081_120 Hb_000002_270--Hb_003398_070 Hb_007576_200 Hb_007576_200 Hb_000002_270--Hb_007576_200
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.118676 0.00683385 0.0391614 0.00862531 0.0351805
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0627941 0.0164698 0 0.0327417 0.0348739

CAGE analysis