Hb_000883_130

Information

Type -
Description -
Location Contig883: 163036-173497
Sequence    

Annotation

kegg
ID rcu:RCOM_0855800
description novel plant snare, putative
nr
ID XP_012075371.1
description PREDICTED: novel plant SNARE 11 [Jatropha curcas]
swissprot
ID Q944A9
description Novel plant SNARE 11 OS=Arabidopsis thaliana GN=NPSN11 PE=1 SV=2
trembl
ID A0A067LNE1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11892 PE=4 SV=1
Gene Ontology
ID GO:0005886
description novel plant snare 11

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_61461: 162986-173669
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000883_130 0.0 - - PREDICTED: novel plant SNARE 11 [Jatropha curcas]
2 Hb_000299_040 0.0921319596 - - PREDICTED: protein S-acyltransferase 10 isoform X1 [Jatropha curcas]
3 Hb_000010_090 0.093179866 - - PREDICTED: afadin- and alpha-actinin-binding protein isoform X1 [Jatropha curcas]
4 Hb_002749_090 0.1022411082 - - -
5 Hb_001348_050 0.1118749495 - - conserved hypothetical protein [Ricinus communis]
6 Hb_004837_190 0.1177566155 - - PREDICTED: uncharacterized protein LOC105648286 [Jatropha curcas]
7 Hb_014720_160 0.1181344851 - - PREDICTED: anthranilate phosphoribosyltransferase, chloroplastic [Jatropha curcas]
8 Hb_001983_030 0.1188672514 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 12 isoform X2 [Jatropha curcas]
9 Hb_014361_100 0.1202882536 - - PREDICTED: casein kinase II subunit alpha [Cicer arietinum]
10 Hb_000053_130 0.1232405273 - - PREDICTED: uncharacterized protein At1g26090, chloroplastic [Jatropha curcas]
11 Hb_001616_080 0.1262399944 - - Oleoyl-acyl carrier protein thioesterase, putative [Ricinus communis]
12 Hb_002506_020 0.1281234207 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP21-1-like isoform X1 [Populus euphratica]
13 Hb_013726_020 0.1282464783 - - ara4-interacting protein, putative [Ricinus communis]
14 Hb_006130_010 0.1284373731 - - PREDICTED: CTP synthase [Jatropha curcas]
15 Hb_001252_100 0.128677496 - - PREDICTED: CASP-like protein 5B2 [Jatropha curcas]
16 Hb_012092_010 0.1307308577 - - PREDICTED: uncharacterized protein LOC105635929 [Jatropha curcas]
17 Hb_031527_100 0.1326877717 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000329_390 0.133929203 transcription factor TF Family: C2H2 conserved hypothetical protein [Ricinus communis]
19 Hb_007594_030 0.1340182487 - - PREDICTED: cucumber peeling cupredoxin-like [Jatropha curcas]
20 Hb_001689_020 0.1350365912 - - hypothetical protein JCGZ_10660 [Jatropha curcas]

Gene co-expression network

sample Hb_000883_130 Hb_000883_130 Hb_000299_040 Hb_000299_040 Hb_000883_130--Hb_000299_040 Hb_000010_090 Hb_000010_090 Hb_000883_130--Hb_000010_090 Hb_002749_090 Hb_002749_090 Hb_000883_130--Hb_002749_090 Hb_001348_050 Hb_001348_050 Hb_000883_130--Hb_001348_050 Hb_004837_190 Hb_004837_190 Hb_000883_130--Hb_004837_190 Hb_014720_160 Hb_014720_160 Hb_000883_130--Hb_014720_160 Hb_001252_100 Hb_001252_100 Hb_000299_040--Hb_001252_100 Hb_000299_040--Hb_000010_090 Hb_000529_160 Hb_000529_160 Hb_000299_040--Hb_000529_160 Hb_000053_130 Hb_000053_130 Hb_000299_040--Hb_000053_130 Hb_033843_010 Hb_033843_010 Hb_000299_040--Hb_033843_010 Hb_000618_030 Hb_000618_030 Hb_000010_090--Hb_000618_030 Hb_000010_090--Hb_000053_130 Hb_000451_010 Hb_000451_010 Hb_000010_090--Hb_000451_010 Hb_073171_040 Hb_073171_040 Hb_000010_090--Hb_073171_040 Hb_003728_080 Hb_003728_080 Hb_000010_090--Hb_003728_080 Hb_009646_030 Hb_009646_030 Hb_002749_090--Hb_009646_030 Hb_000236_240 Hb_000236_240 Hb_002749_090--Hb_000236_240 Hb_005288_150 Hb_005288_150 Hb_002749_090--Hb_005288_150 Hb_003020_010 Hb_003020_010 Hb_002749_090--Hb_003020_010 Hb_002997_080 Hb_002997_080 Hb_002749_090--Hb_002997_080 Hb_000236_380 Hb_000236_380 Hb_001348_050--Hb_000236_380 Hb_000592_080 Hb_000592_080 Hb_001348_050--Hb_000592_080 Hb_014361_100 Hb_014361_100 Hb_001348_050--Hb_014361_100 Hb_140171_010 Hb_140171_010 Hb_001348_050--Hb_140171_010 Hb_000329_390 Hb_000329_390 Hb_001348_050--Hb_000329_390 Hb_007592_030 Hb_007592_030 Hb_001348_050--Hb_007592_030 Hb_006620_020 Hb_006620_020 Hb_004837_190--Hb_006620_020 Hb_031527_100 Hb_031527_100 Hb_004837_190--Hb_031527_100 Hb_001341_120 Hb_001341_120 Hb_004837_190--Hb_001341_120 Hb_000913_050 Hb_000913_050 Hb_004837_190--Hb_000913_050 Hb_000538_100 Hb_000538_100 Hb_004837_190--Hb_000538_100 Hb_004837_190--Hb_000618_030 Hb_000922_330 Hb_000922_330 Hb_014720_160--Hb_000922_330 Hb_007547_010 Hb_007547_010 Hb_014720_160--Hb_007547_010 Hb_000085_060 Hb_000085_060 Hb_014720_160--Hb_000085_060 Hb_003609_040 Hb_003609_040 Hb_014720_160--Hb_003609_040 Hb_000001_020 Hb_000001_020 Hb_014720_160--Hb_000001_020 Hb_005662_030 Hb_005662_030 Hb_014720_160--Hb_005662_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
29.1716 2.64655 21.2289 17.6943 36.4859 29.3457
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
21.1771 13.9017 20.8286 8.5836 8.69312

CAGE analysis