Hb_000886_030

Information

Type -
Description -
Location Contig886: 43724-44122
Sequence    

Annotation

kegg
ID pop:POPTR_0004s22940g
description hypothetical protein
nr
ID XP_011007874.1
description PREDICTED: uncharacterized protein LOC105113410 [Populus euphratica]
swissprot
ID -
description -
trembl
ID B9PC87
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0004s22940g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000886_030 0.0 - - PREDICTED: uncharacterized protein LOC105113410 [Populus euphratica]
2 Hb_003687_030 0.185554369 - - protein phosphatase 2c, putative [Ricinus communis]
3 Hb_001675_030 0.188744868 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000529_280 0.2009739491 - - PREDICTED: CBS domain-containing protein CBSX1, chloroplastic [Jatropha curcas]
5 Hb_172632_050 0.2052001631 - - PREDICTED: uncharacterized protein LOC105646134 [Jatropha curcas]
6 Hb_004787_040 0.2056705969 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000465_510 0.2110098706 - - PREDICTED: GTP-binding protein YPTM2 [Populus euphratica]
8 Hb_000599_310 0.2116236582 - - PREDICTED: pleckstrin homology domain-containing family A member 8-like [Jatropha curcas]
9 Hb_000270_740 0.2151984195 - - PREDICTED: probable inactive receptor kinase At2g26730 [Jatropha curcas]
10 Hb_104764_010 0.2154395822 - - hypothetical protein JCGZ_16024 [Jatropha curcas]
11 Hb_000694_060 0.2194491158 - - Rotenone-insensitive NADH-ubiquinone oxidoreductase, mitochondrial precursor, putative [Ricinus communis]
12 Hb_000891_030 0.2217918385 - - PREDICTED: uncharacterized protein At4g22758 [Jatropha curcas]
13 Hb_005144_190 0.2219686833 - - hypothetical protein F383_09558 [Gossypium arboreum]
14 Hb_002227_010 0.2310393012 - - PREDICTED: 7-deoxyloganetin glucosyltransferase-like [Populus euphratica]
15 Hb_012807_130 0.2333652795 - - PREDICTED: lactoylglutathione lyase [Jatropha curcas]
16 Hb_000139_470 0.2336753305 - - Dual specificity protein phosphatase, putative [Ricinus communis]
17 Hb_004679_060 0.2354238364 - - conserved hypothetical protein [Ricinus communis]
18 Hb_002835_340 0.2381393282 - - PREDICTED: peroxisomal primary amine oxidase [Jatropha curcas]
19 Hb_000318_080 0.2391302453 - - PREDICTED: la-related protein 6C [Jatropha curcas]
20 Hb_001322_070 0.2391422161 - - protein with unknown function [Ricinus communis]

Gene co-expression network

sample Hb_000886_030 Hb_000886_030 Hb_003687_030 Hb_003687_030 Hb_000886_030--Hb_003687_030 Hb_001675_030 Hb_001675_030 Hb_000886_030--Hb_001675_030 Hb_000529_280 Hb_000529_280 Hb_000886_030--Hb_000529_280 Hb_172632_050 Hb_172632_050 Hb_000886_030--Hb_172632_050 Hb_004787_040 Hb_004787_040 Hb_000886_030--Hb_004787_040 Hb_000465_510 Hb_000465_510 Hb_000886_030--Hb_000465_510 Hb_003687_030--Hb_001675_030 Hb_001728_020 Hb_001728_020 Hb_003687_030--Hb_001728_020 Hb_003687_030--Hb_172632_050 Hb_028707_070 Hb_028707_070 Hb_003687_030--Hb_028707_070 Hb_003687_030--Hb_000529_280 Hb_001675_030--Hb_172632_050 Hb_001675_030--Hb_000529_280 Hb_012807_130 Hb_012807_130 Hb_001675_030--Hb_012807_130 Hb_001675_030--Hb_028707_070 Hb_001675_030--Hb_001728_020 Hb_000529_280--Hb_001728_020 Hb_000723_230 Hb_000723_230 Hb_000529_280--Hb_000723_230 Hb_000645_200 Hb_000645_200 Hb_000529_280--Hb_000645_200 Hb_000139_470 Hb_000139_470 Hb_000529_280--Hb_000139_470 Hb_000529_280--Hb_172632_050 Hb_093458_010 Hb_093458_010 Hb_000529_280--Hb_093458_010 Hb_172632_050--Hb_001728_020 Hb_006060_020 Hb_006060_020 Hb_172632_050--Hb_006060_020 Hb_006643_020 Hb_006643_020 Hb_172632_050--Hb_006643_020 Hb_004449_180 Hb_004449_180 Hb_172632_050--Hb_004449_180 Hb_172632_050--Hb_000139_470 Hb_002309_050 Hb_002309_050 Hb_004787_040--Hb_002309_050 Hb_170426_010 Hb_170426_010 Hb_004787_040--Hb_170426_010 Hb_000270_740 Hb_000270_740 Hb_004787_040--Hb_000270_740 Hb_020805_060 Hb_020805_060 Hb_004787_040--Hb_020805_060 Hb_004679_060 Hb_004679_060 Hb_004787_040--Hb_004679_060 Hb_000189_540 Hb_000189_540 Hb_004787_040--Hb_000189_540 Hb_003929_150 Hb_003929_150 Hb_000465_510--Hb_003929_150 Hb_001322_070 Hb_001322_070 Hb_000465_510--Hb_001322_070 Hb_000768_130 Hb_000768_130 Hb_000465_510--Hb_000768_130 Hb_002060_010 Hb_002060_010 Hb_000465_510--Hb_002060_010 Hb_000327_380 Hb_000327_380 Hb_000465_510--Hb_000327_380 Hb_010560_030 Hb_010560_030 Hb_000465_510--Hb_010560_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 1.38636 0.975605 1.86904 0.165198 0.0769724
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.00119 2.98838 0.25153 1.01139 0.276202

CAGE analysis