Hb_000886_060

Information

Type -
Description -
Location Contig886: 76496-82240
Sequence    

Annotation

kegg
ID mdm:103422052
description serine/threonine-protein kinase SAPK2-like
nr
ID XP_003631616.1
description PREDICTED: serine/threonine-protein kinase SAPK10 isoform X2 [Vitis vinifera]
swissprot
ID Q2U469
description Mitogen-activated protein kinase mpkC OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40) GN=mpkC PE=3 SV=2
trembl
ID A0A096T3C8
description Uncharacterized protein OS=Zea mays GN=LOC100381806 PE=4 SV=1
Gene Ontology
ID GO:0003677
description serine threonine-protein kinase srk2a

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_61493: 78035-78366 , PASA_asmbl_61494: 81765-82026
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000886_060 0.0 - - PREDICTED: serine/threonine-protein kinase SAPK10 isoform X2 [Vitis vinifera]
2 Hb_001052_040 0.1060570757 - - Ferredoxin-3, chloroplast precursor, putative [Ricinus communis]
3 Hb_073973_160 0.1239264407 - - Transmembrane emp24 domain-containing protein 10 precursor, putative [Ricinus communis]
4 Hb_010584_010 0.1257591094 - - PREDICTED: probable zinc transporter protein DDB_G0282067 [Jatropha curcas]
5 Hb_002002_030 0.1274938307 desease resistance Gene Name: NB-ARC Disease resistance protein RPS5, putative [Ricinus communis]
6 Hb_000331_160 0.1375731632 - - adenylate kinase 1 chloroplast, putative [Ricinus communis]
7 Hb_000261_290 0.1385980982 - - eukaryotic translation elongation factor 1-alpha [Hevea brasiliensis]
8 Hb_001976_090 0.1400527734 - - PREDICTED: uncharacterized protein LOC105641696 [Jatropha curcas]
9 Hb_003710_040 0.1401689259 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance RPP13-like protein 4 [Jatropha curcas]
10 Hb_128376_010 0.141267015 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
11 Hb_004017_040 0.1414015611 - - kinetochore protein nuf2, putative [Ricinus communis]
12 Hb_001040_120 0.1446538896 - - allantoinase, putative [Ricinus communis]
13 Hb_173178_020 0.1476321253 - - PREDICTED: vesicle transport v-SNARE 12-like isoform X1 [Jatropha curcas]
14 Hb_002742_080 0.1482273606 - - unknown [Populus trichocarpa]
15 Hb_170487_010 0.1517331592 - - -
16 Hb_000152_670 0.1522295424 - - hypothetical protein VITISV_037603 [Vitis vinifera]
17 Hb_010831_020 0.1534102175 - - hypothetical protein POPTR_0013s02830g [Populus trichocarpa]
18 Hb_000613_100 0.1539004127 - - PREDICTED: long chain acyl-CoA synthetase 8 [Jatropha curcas]
19 Hb_015354_010 0.1540970645 - - PREDICTED: B2 protein [Jatropha curcas]
20 Hb_000116_460 0.1542594216 - - PREDICTED: plant intracellular Ras-group-related LRR protein 4 [Jatropha curcas]

Gene co-expression network

sample Hb_000886_060 Hb_000886_060 Hb_001052_040 Hb_001052_040 Hb_000886_060--Hb_001052_040 Hb_073973_160 Hb_073973_160 Hb_000886_060--Hb_073973_160 Hb_010584_010 Hb_010584_010 Hb_000886_060--Hb_010584_010 Hb_002002_030 Hb_002002_030 Hb_000886_060--Hb_002002_030 Hb_000331_160 Hb_000331_160 Hb_000886_060--Hb_000331_160 Hb_000261_290 Hb_000261_290 Hb_000886_060--Hb_000261_290 Hb_015354_010 Hb_015354_010 Hb_001052_040--Hb_015354_010 Hb_000152_670 Hb_000152_670 Hb_001052_040--Hb_000152_670 Hb_002742_080 Hb_002742_080 Hb_001052_040--Hb_002742_080 Hb_001910_020 Hb_001910_020 Hb_001052_040--Hb_001910_020 Hb_173178_020 Hb_173178_020 Hb_001052_040--Hb_173178_020 Hb_003050_370 Hb_003050_370 Hb_073973_160--Hb_003050_370 Hb_003858_040 Hb_003858_040 Hb_073973_160--Hb_003858_040 Hb_073973_160--Hb_001910_020 Hb_000375_030 Hb_000375_030 Hb_073973_160--Hb_000375_030 Hb_002320_070 Hb_002320_070 Hb_073973_160--Hb_002320_070 Hb_001085_320 Hb_001085_320 Hb_073973_160--Hb_001085_320 Hb_057451_010 Hb_057451_010 Hb_010584_010--Hb_057451_010 Hb_009028_030 Hb_009028_030 Hb_010584_010--Hb_009028_030 Hb_003710_040 Hb_003710_040 Hb_010584_010--Hb_003710_040 Hb_007257_050 Hb_007257_050 Hb_010584_010--Hb_007257_050 Hb_002609_010 Hb_002609_010 Hb_010584_010--Hb_002609_010 Hb_000640_200 Hb_000640_200 Hb_010584_010--Hb_000640_200 Hb_155702_010 Hb_155702_010 Hb_002002_030--Hb_155702_010 Hb_005038_020 Hb_005038_020 Hb_002002_030--Hb_005038_020 Hb_004310_050 Hb_004310_050 Hb_002002_030--Hb_004310_050 Hb_002849_080 Hb_002849_080 Hb_002002_030--Hb_002849_080 Hb_002270_010 Hb_002270_010 Hb_002002_030--Hb_002270_010 Hb_002002_030--Hb_010584_010 Hb_000640_020 Hb_000640_020 Hb_000331_160--Hb_000640_020 Hb_032202_240 Hb_032202_240 Hb_000331_160--Hb_032202_240 Hb_002326_020 Hb_002326_020 Hb_000331_160--Hb_002326_020 Hb_023020_060 Hb_023020_060 Hb_000331_160--Hb_023020_060 Hb_001492_010 Hb_001492_010 Hb_000331_160--Hb_001492_010 Hb_000504_160 Hb_000504_160 Hb_000331_160--Hb_000504_160 Hb_000098_130 Hb_000098_130 Hb_000261_290--Hb_000098_130 Hb_004899_070 Hb_004899_070 Hb_000261_290--Hb_004899_070 Hb_000120_620 Hb_000120_620 Hb_000261_290--Hb_000120_620 Hb_000313_340 Hb_000313_340 Hb_000261_290--Hb_000313_340 Hb_003097_180 Hb_003097_180 Hb_000261_290--Hb_003097_180 Hb_006588_050 Hb_006588_050 Hb_000261_290--Hb_006588_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.40943 1.79413 0.427362 1.4654 2.20294 2.3663
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.594042 0.379687 0.381714 0.525801 0.121371

CAGE analysis