Hb_000887_020

Information

Type -
Description -
Location Contig887: 32951-39192
Sequence    

Annotation

kegg
ID rcu:RCOM_0623830
description hypothetical protein
nr
ID XP_012071523.1
description PREDICTED: uncharacterized protein LOC105633527 [Jatropha curcas]
swissprot
ID Q8GMT0
description Nucleoid-associated protein Synpcc7942_0464 OS=Synechococcus elongatus (strain PCC 7942) GN=Synpcc7942_0464 PE=3 SV=2
trembl
ID A0A067KR51
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04044 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_61517: 32982-39138
cDNA
(Sanger)
(ID:Location)		 005_B08.ab1: 33083-39000 , 020_P04.ab1: 33016-39035 , 036_G16.ab1: 33021-39061 , 048_L22.ab1: 33022-39033 , 049_H02.ab1: 33001-39025

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000887_020 0.0 - - PREDICTED: uncharacterized protein LOC105633527 [Jatropha curcas]
2 Hb_024682_010 0.071592039 - - sterol isomerase, putative [Ricinus communis]
3 Hb_003607_050 0.0809462608 - - PREDICTED: uncharacterized protein LOC105644428 [Jatropha curcas]
4 Hb_000251_070 0.0864296529 - - hypothetical protein L484_010641 [Morus notabilis]
5 Hb_004934_110 0.0867413858 transcription factor TF Family: HMG hypothetical protein B456_002G115100 [Gossypium raimondii]
6 Hb_004204_120 0.0870088136 - - PREDICTED: plant intracellular Ras-group-related LRR protein 7 [Jatropha curcas]
7 Hb_003125_190 0.0878043555 - - hypothetical protein POPTR_0015s10960g [Populus trichocarpa]
8 Hb_000120_760 0.0903495586 transcription factor TF Family: HMG PREDICTED: HMG1/2-like protein [Populus euphratica]
9 Hb_000127_010 0.0912007027 - - PREDICTED: ribonucleoside-diphosphate reductase large subunit [Populus euphratica]
10 Hb_012725_050 0.0914385596 transcription factor TF Family: SET set domain protein, putative [Ricinus communis]
11 Hb_002284_090 0.0931245943 - - PREDICTED: outer envelope pore protein 21B, chloroplastic [Jatropha curcas]
12 Hb_139518_030 0.0954961511 - - protein kinase atn1, putative [Ricinus communis]
13 Hb_002045_040 0.0964040613 - - PREDICTED: protein OSB2, chloroplastic-like isoform X1 [Jatropha curcas]
14 Hb_000454_050 0.099781121 - - PREDICTED: NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 9 [Vitis vinifera]
15 Hb_001157_020 0.1013732753 - - PREDICTED: uncharacterized protein LOC105649844 isoform X1 [Jatropha curcas]
16 Hb_181288_010 0.1021765619 - - rac-GTP binding protein, putative [Ricinus communis]
17 Hb_003749_010 0.1033007611 - - conserved hypothetical protein [Ricinus communis]
18 Hb_010407_040 0.1042172024 - - PREDICTED: uncharacterized protein At4g14342 isoform X1 [Nelumbo nucifera]
19 Hb_011381_060 0.1053269021 - - PREDICTED: ADP-ribosylation factor 3 [Jatropha curcas]
20 Hb_000331_080 0.1076216212 - - PREDICTED: UPF0235 protein At5g63440 isoform X1 [Gossypium raimondii]

Gene co-expression network

sample Hb_000887_020 Hb_000887_020 Hb_024682_010 Hb_024682_010 Hb_000887_020--Hb_024682_010 Hb_003607_050 Hb_003607_050 Hb_000887_020--Hb_003607_050 Hb_000251_070 Hb_000251_070 Hb_000887_020--Hb_000251_070 Hb_004934_110 Hb_004934_110 Hb_000887_020--Hb_004934_110 Hb_004204_120 Hb_004204_120 Hb_000887_020--Hb_004204_120 Hb_003125_190 Hb_003125_190 Hb_000887_020--Hb_003125_190 Hb_012725_050 Hb_012725_050 Hb_024682_010--Hb_012725_050 Hb_000127_010 Hb_000127_010 Hb_024682_010--Hb_000127_010 Hb_000454_050 Hb_000454_050 Hb_024682_010--Hb_000454_050 Hb_001157_020 Hb_001157_020 Hb_024682_010--Hb_001157_020 Hb_001328_040 Hb_001328_040 Hb_024682_010--Hb_001328_040 Hb_003607_050--Hb_003125_190 Hb_003607_050--Hb_004934_110 Hb_010106_010 Hb_010106_010 Hb_003607_050--Hb_010106_010 Hb_139518_030 Hb_139518_030 Hb_003607_050--Hb_139518_030 Hb_003749_010 Hb_003749_010 Hb_003607_050--Hb_003749_010 Hb_005186_050 Hb_005186_050 Hb_000251_070--Hb_005186_050 Hb_000251_070--Hb_004934_110 Hb_001662_070 Hb_001662_070 Hb_000251_070--Hb_001662_070 Hb_145880_030 Hb_145880_030 Hb_000251_070--Hb_145880_030 Hb_003607_150 Hb_003607_150 Hb_000251_070--Hb_003607_150 Hb_007154_020 Hb_007154_020 Hb_000251_070--Hb_007154_020 Hb_004931_090 Hb_004931_090 Hb_004934_110--Hb_004931_090 Hb_004657_050 Hb_004657_050 Hb_004934_110--Hb_004657_050 Hb_000331_080 Hb_000331_080 Hb_004934_110--Hb_000331_080 Hb_000840_030 Hb_000840_030 Hb_004934_110--Hb_000840_030 Hb_002685_190 Hb_002685_190 Hb_004204_120--Hb_002685_190 Hb_002030_040 Hb_002030_040 Hb_004204_120--Hb_002030_040 Hb_001235_190 Hb_001235_190 Hb_004204_120--Hb_001235_190 Hb_070986_010 Hb_070986_010 Hb_004204_120--Hb_070986_010 Hb_000120_750 Hb_000120_750 Hb_004204_120--Hb_000120_750 Hb_000798_030 Hb_000798_030 Hb_004204_120--Hb_000798_030 Hb_003683_110 Hb_003683_110 Hb_003125_190--Hb_003683_110 Hb_003125_190--Hb_010106_010 Hb_003125_190--Hb_139518_030 Hb_000996_140 Hb_000996_140 Hb_003125_190--Hb_000996_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
97.8295 23.1024 76.076 35.5525 81.0831 86.9383
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
182.755 155.49 66.8624 30.7952 51.4547

CAGE analysis