Hb_000890_030

Information

Type -
Description -
Location Contig890: 18975-39835
Sequence    

Annotation

kegg
ID tcc:TCM_021183
description Cullin 1 isoform 1
nr
ID ADI39635.1
description plastid CUL1 [Hevea brasiliensis]
swissprot
ID Q94AH6
description Cullin-1 OS=Arabidopsis thaliana GN=CUL1 PE=1 SV=1
trembl
ID D8V3L8
description Plastid CUL1 OS=Hevea brasiliensis GN=CUL1 PE=2 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_61579: 19005-20210 , PASA_asmbl_61581: 30795-31176 , PASA_asmbl_61582: 32340-33300
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000890_030 0.0 - - plastid CUL1 [Hevea brasiliensis]
2 Hb_000580_030 0.0698409825 - - PREDICTED: probable protein S-acyltransferase 14 [Jatropha curcas]
3 Hb_012760_030 0.0737457564 - - PREDICTED: probable prolyl 4-hydroxylase 10 [Gossypium raimondii]
4 Hb_016461_020 0.0753499978 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000098_050 0.0761827594 - - BnaCnng11900D [Brassica napus]
6 Hb_044486_020 0.0762711537 - - CASTOR protein [Glycine max]
7 Hb_000805_210 0.0785424976 - - PREDICTED: oxysterol-binding protein-related protein 3C-like [Jatropha curcas]
8 Hb_000300_550 0.0814709016 - - PREDICTED: uncharacterized protein At1g04910-like [Jatropha curcas]
9 Hb_027654_020 0.0816276871 - - PREDICTED: LIMR family protein At5g01460 [Jatropha curcas]
10 Hb_005381_020 0.0821225057 - - PREDICTED: uncharacterized protein LOC105630417 [Jatropha curcas]
11 Hb_001623_110 0.0844746225 - - PREDICTED: xylosyltransferase 1 [Jatropha curcas]
12 Hb_000046_600 0.0855417334 - - PREDICTED: cullin-1-like [Jatropha curcas]
13 Hb_000622_340 0.0859597379 - - PREDICTED: UDP-D-xylose:L-fucose alpha-1,3-D-xylosyltransferase MGP4 [Jatropha curcas]
14 Hb_001699_010 0.0882916628 - - drought-inducible protein [Manihot esculenta]
15 Hb_000085_260 0.0893526874 - - glycerophosphoryl diester phosphodiesterase, putative [Ricinus communis]
16 Hb_005288_140 0.0905625934 - - PREDICTED: serine/threonine protein phosphatase 2A regulatory subunit B''beta-like [Jatropha curcas]
17 Hb_006022_010 0.0912157517 - - PREDICTED: uncharacterized protein LOC105628883 [Jatropha curcas]
18 Hb_000418_010 0.0930242532 - - PREDICTED: repressor of RNA polymerase III transcription MAF1 homolog [Jatropha curcas]
19 Hb_005322_050 0.0940837678 - - hypothetical protein POPTR_0009s02400g [Populus trichocarpa]
20 Hb_121089_030 0.0942901058 - - PREDICTED: dynamin-related protein 5A [Jatropha curcas]

Gene co-expression network

sample Hb_000890_030 Hb_000890_030 Hb_000580_030 Hb_000580_030 Hb_000890_030--Hb_000580_030 Hb_012760_030 Hb_012760_030 Hb_000890_030--Hb_012760_030 Hb_016461_020 Hb_016461_020 Hb_000890_030--Hb_016461_020 Hb_000098_050 Hb_000098_050 Hb_000890_030--Hb_000098_050 Hb_044486_020 Hb_044486_020 Hb_000890_030--Hb_044486_020 Hb_000805_210 Hb_000805_210 Hb_000890_030--Hb_000805_210 Hb_001489_100 Hb_001489_100 Hb_000580_030--Hb_001489_100 Hb_007800_020 Hb_007800_020 Hb_000580_030--Hb_007800_020 Hb_027654_020 Hb_027654_020 Hb_000580_030--Hb_027654_020 Hb_005322_050 Hb_005322_050 Hb_000580_030--Hb_005322_050 Hb_001623_110 Hb_001623_110 Hb_000580_030--Hb_001623_110 Hb_000784_080 Hb_000784_080 Hb_012760_030--Hb_000784_080 Hb_012760_030--Hb_001623_110 Hb_000671_030 Hb_000671_030 Hb_012760_030--Hb_000671_030 Hb_007919_110 Hb_007919_110 Hb_012760_030--Hb_007919_110 Hb_004724_390 Hb_004724_390 Hb_012760_030--Hb_004724_390 Hb_000297_030 Hb_000297_030 Hb_016461_020--Hb_000297_030 Hb_005305_100 Hb_005305_100 Hb_016461_020--Hb_005305_100 Hb_000046_600 Hb_000046_600 Hb_016461_020--Hb_000046_600 Hb_006468_010 Hb_006468_010 Hb_016461_020--Hb_006468_010 Hb_000579_130 Hb_000579_130 Hb_016461_020--Hb_000579_130 Hb_009247_010 Hb_009247_010 Hb_000098_050--Hb_009247_010 Hb_000320_290 Hb_000320_290 Hb_000098_050--Hb_000320_290 Hb_005062_110 Hb_005062_110 Hb_000098_050--Hb_005062_110 Hb_000085_260 Hb_000085_260 Hb_000098_050--Hb_000085_260 Hb_000098_050--Hb_044486_020 Hb_000359_190 Hb_000359_190 Hb_044486_020--Hb_000359_190 Hb_000020_160 Hb_000020_160 Hb_044486_020--Hb_000020_160 Hb_001677_200 Hb_001677_200 Hb_044486_020--Hb_001677_200 Hb_010315_020 Hb_010315_020 Hb_044486_020--Hb_010315_020 Hb_086063_020 Hb_086063_020 Hb_044486_020--Hb_086063_020 Hb_002615_070 Hb_002615_070 Hb_000805_210--Hb_002615_070 Hb_000805_210--Hb_001623_110 Hb_000805_210--Hb_012760_030 Hb_000958_080 Hb_000958_080 Hb_000805_210--Hb_000958_080 Hb_083628_010 Hb_083628_010 Hb_000805_210--Hb_083628_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
13.2779 31.6227 29.0043 39.2654 15.0385 17.5275
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.86841 9.17821 10.743 17.8986 15.6973

CAGE analysis