Hb_000890_040

Information

Type -
Description -
Location Contig890: 43836-45653
Sequence    

Annotation

kegg
ID pop:POPTR_0008s22620g
description pentatricopeptide repeat-containing family protein
nr
ID XP_012069906.1
description PREDICTED: pentatricopeptide repeat-containing protein At4g15720 [Jatropha curcas]
swissprot
ID Q8VYH0
description Pentatricopeptide repeat-containing protein At4g15720 OS=Arabidopsis thaliana GN=PCMP-H1 PE=2 SV=1
trembl
ID A0A067KYD1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01996 PE=4 SV=1
Gene Ontology
ID GO:0008568
description pentatricopeptide repeat-containing protein at4g15720

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000890_040 0.0 - - PREDICTED: pentatricopeptide repeat-containing protein At4g15720 [Jatropha curcas]
2 Hb_134951_010 0.1035072764 - - PREDICTED: transcription factor MYB1R1 [Jatropha curcas]
3 Hb_000046_300 0.1056462465 transcription factor TF Family: TUB phosphoric diester hydrolase, putative [Ricinus communis]
4 Hb_007164_020 0.1061507436 - - hypothetical protein glysoja_025872 [Glycine soja]
5 Hb_000721_010 0.1066032627 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000175_450 0.1086188126 - - PREDICTED: pentatricopeptide repeat-containing protein At1g52620 [Jatropha curcas]
7 Hb_000465_470 0.1097591054 - - unknown [Picea sitchensis]
8 Hb_011316_050 0.1142787449 - - hypothetical protein CICLE_v10004643mg [Citrus clementina]
9 Hb_002301_220 0.1145441092 transcription factor TF Family: C3H PREDICTED: protein FRIGIDA-ESSENTIAL 1-like isoform X1 [Jatropha curcas]
10 Hb_001898_230 0.1150033177 - - PREDICTED: KH domain-containing protein At1g09660/At1g09670 isoform X2 [Jatropha curcas]
11 Hb_001511_020 0.1154203043 - - PREDICTED: peroxisome biogenesis protein 22 [Jatropha curcas]
12 Hb_004109_040 0.1170008385 - - PREDICTED: pentatricopeptide repeat-containing protein At1g53600, mitochondrial [Jatropha curcas]
13 Hb_189147_010 0.1174393325 transcription factor TF Family: mTERF conserved hypothetical protein [Ricinus communis]
14 Hb_001245_070 0.1179965946 - - PREDICTED: uncharacterized protein LOC105633557 [Jatropha curcas]
15 Hb_185467_010 0.1188456703 - - -
16 Hb_000162_090 0.1212865168 - - PREDICTED: methyltransferase-like protein 16 isoform X1 [Jatropha curcas]
17 Hb_063100_010 0.1221460217 - - TATA box-binding protein-associated factor [Populus trichocarpa]
18 Hb_000453_170 0.1228365893 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
19 Hb_001439_150 0.1234500922 - - PREDICTED: pentatricopeptide repeat-containing protein At5g15340, mitochondrial [Jatropha curcas]
20 Hb_001141_330 0.1236181964 - - PREDICTED: pentatricopeptide repeat-containing protein At4g14850 [Jatropha curcas]

Gene co-expression network

sample Hb_000890_040 Hb_000890_040 Hb_134951_010 Hb_134951_010 Hb_000890_040--Hb_134951_010 Hb_000046_300 Hb_000046_300 Hb_000890_040--Hb_000046_300 Hb_007164_020 Hb_007164_020 Hb_000890_040--Hb_007164_020 Hb_000721_010 Hb_000721_010 Hb_000890_040--Hb_000721_010 Hb_000175_450 Hb_000175_450 Hb_000890_040--Hb_000175_450 Hb_000465_470 Hb_000465_470 Hb_000890_040--Hb_000465_470 Hb_001486_080 Hb_001486_080 Hb_134951_010--Hb_001486_080 Hb_001828_200 Hb_001828_200 Hb_134951_010--Hb_001828_200 Hb_001898_230 Hb_001898_230 Hb_134951_010--Hb_001898_230 Hb_002024_040 Hb_002024_040 Hb_134951_010--Hb_002024_040 Hb_002284_280 Hb_002284_280 Hb_134951_010--Hb_002284_280 Hb_001623_140 Hb_001623_140 Hb_134951_010--Hb_001623_140 Hb_001439_150 Hb_001439_150 Hb_000046_300--Hb_001439_150 Hb_000666_110 Hb_000666_110 Hb_000046_300--Hb_000666_110 Hb_000046_300--Hb_002024_040 Hb_001511_020 Hb_001511_020 Hb_000046_300--Hb_001511_020 Hb_001357_090 Hb_001357_090 Hb_000046_300--Hb_001357_090 Hb_006065_020 Hb_006065_020 Hb_000046_300--Hb_006065_020 Hb_189147_010 Hb_189147_010 Hb_007164_020--Hb_189147_010 Hb_001504_150 Hb_001504_150 Hb_007164_020--Hb_001504_150 Hb_007164_020--Hb_001898_230 Hb_106552_050 Hb_106552_050 Hb_007164_020--Hb_106552_050 Hb_000085_240 Hb_000085_240 Hb_007164_020--Hb_000085_240 Hb_000359_330 Hb_000359_330 Hb_007164_020--Hb_000359_330 Hb_000721_010--Hb_006065_020 Hb_001847_020 Hb_001847_020 Hb_000721_010--Hb_001847_020 Hb_185467_010 Hb_185467_010 Hb_000721_010--Hb_185467_010 Hb_000721_010--Hb_000046_300 Hb_000000_080 Hb_000000_080 Hb_000721_010--Hb_000000_080 Hb_000926_020 Hb_000926_020 Hb_000721_010--Hb_000926_020 Hb_001159_100 Hb_001159_100 Hb_000175_450--Hb_001159_100 Hb_000754_060 Hb_000754_060 Hb_000175_450--Hb_000754_060 Hb_001913_010 Hb_001913_010 Hb_000175_450--Hb_001913_010 Hb_000500_040 Hb_000500_040 Hb_000175_450--Hb_000500_040 Hb_029584_130 Hb_029584_130 Hb_000175_450--Hb_029584_130 Hb_000953_010 Hb_000953_010 Hb_000175_450--Hb_000953_010 Hb_001541_260 Hb_001541_260 Hb_000465_470--Hb_001541_260 Hb_000465_470--Hb_106552_050 Hb_000236_100 Hb_000236_100 Hb_000465_470--Hb_000236_100 Hb_000663_040 Hb_000663_040 Hb_000465_470--Hb_000663_040 Hb_002301_220 Hb_002301_220 Hb_000465_470--Hb_002301_220 Hb_000032_490 Hb_000032_490 Hb_000465_470--Hb_000032_490
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.74158 2.1406 1.89949 0.370999 2.39724 3.1392
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.38063 2.09356 3.10016 0.786522 0.707472

CAGE analysis