Hb_000890_050

Information

Type -
Description -
Location Contig890: 47485-57087
Sequence    

Annotation

kegg
ID tcc:TCM_021180
description CW-type Zinc Finger-like protein
nr
ID XP_012069368.1
description PREDICTED: uncharacterized protein LOC105631800 [Jatropha curcas]
swissprot
ID Q8TE76
description MORC family CW-type zinc finger protein 4 OS=Homo sapiens GN=MORC4 PE=1 SV=2
trembl
ID A0A067L7B9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01997 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_61585: 47687-49806 , PASA_asmbl_61586: 52172-52430 , PASA_asmbl_61587: 52771-53991 , PASA_asmbl_61588: 55003-55355 , PASA_asmbl_61589: 56793-56914
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000890_050 0.0 - - PREDICTED: uncharacterized protein LOC105631800 [Jatropha curcas]
2 Hb_009767_080 0.0609133399 transcription factor TF Family: PHD PREDICTED: uncharacterized protein LOC105631983 [Jatropha curcas]
3 Hb_004143_130 0.07012389 - - PREDICTED: BEACH domain-containing protein lvsC [Jatropha curcas]
4 Hb_000270_670 0.0712236707 transcription factor TF Family: IWS1 PREDICTED: uncharacterized protein LOC105640420 [Jatropha curcas]
5 Hb_015807_070 0.0742287758 - - PREDICTED: autophagy-related protein 18f [Jatropha curcas]
6 Hb_000318_390 0.0748245386 - - PREDICTED: uncharacterized protein LOC105631693 isoform X1 [Jatropha curcas]
7 Hb_001967_030 0.0751301469 - - PREDICTED: uncharacterized protein LOC105633557 [Jatropha curcas]
8 Hb_001205_230 0.0761085412 - - PREDICTED: acidic leucine-rich nuclear phosphoprotein 32-related protein [Jatropha curcas]
9 Hb_001268_380 0.0784073349 - - PREDICTED: pentatricopeptide repeat-containing protein At5g14080-like [Jatropha curcas]
10 Hb_012656_030 0.078907893 transcription factor TF Family: PHD PREDICTED: protein CHROMATIN REMODELING 4 isoform X1 [Jatropha curcas]
11 Hb_000866_120 0.0791510047 - - PREDICTED: mediator of RNA polymerase II transcription subunit 12 [Jatropha curcas]
12 Hb_000229_030 0.0801216669 - - PREDICTED: pentatricopeptide repeat-containing protein At1g73710 [Jatropha curcas]
13 Hb_014267_010 0.0830194313 - - PREDICTED: dnaJ homolog subfamily C GRV2 isoform X1 [Jatropha curcas]
14 Hb_000977_120 0.0851012964 - - PREDICTED: sister chromatid cohesion 1 protein 4 isoform X2 [Jatropha curcas]
15 Hb_000684_250 0.0858602818 - - PREDICTED: uncharacterized protein LOC105642172 [Jatropha curcas]
16 Hb_000803_260 0.0862816733 transcription factor TF Family: DDT PREDICTED: uncharacterized protein LOC105648320 [Jatropha curcas]
17 Hb_002316_150 0.0863085047 transcription factor TF Family: IWS1 PREDICTED: uncharacterized protein LOC105640420 [Jatropha curcas]
18 Hb_000035_290 0.0868978447 - - RNA recognition motif-containing family protein [Populus trichocarpa]
19 Hb_009898_010 0.087738311 transcription factor TF Family: MYB PREDICTED: uncharacterized protein LOC105645502 [Jatropha curcas]
20 Hb_002235_300 0.0883770039 - - PREDICTED: pentatricopeptide repeat-containing protein At5g15280 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000890_050 Hb_000890_050 Hb_009767_080 Hb_009767_080 Hb_000890_050--Hb_009767_080 Hb_004143_130 Hb_004143_130 Hb_000890_050--Hb_004143_130 Hb_000270_670 Hb_000270_670 Hb_000890_050--Hb_000270_670 Hb_015807_070 Hb_015807_070 Hb_000890_050--Hb_015807_070 Hb_000318_390 Hb_000318_390 Hb_000890_050--Hb_000318_390 Hb_001967_030 Hb_001967_030 Hb_000890_050--Hb_001967_030 Hb_019430_020 Hb_019430_020 Hb_009767_080--Hb_019430_020 Hb_000684_250 Hb_000684_250 Hb_009767_080--Hb_000684_250 Hb_009898_010 Hb_009898_010 Hb_009767_080--Hb_009898_010 Hb_000321_150 Hb_000321_150 Hb_009767_080--Hb_000321_150 Hb_000069_470 Hb_000069_470 Hb_009767_080--Hb_000069_470 Hb_000028_280 Hb_000028_280 Hb_004143_130--Hb_000028_280 Hb_002942_100 Hb_002942_100 Hb_004143_130--Hb_002942_100 Hb_003253_040 Hb_003253_040 Hb_004143_130--Hb_003253_040 Hb_010174_110 Hb_010174_110 Hb_004143_130--Hb_010174_110 Hb_002740_110 Hb_002740_110 Hb_004143_130--Hb_002740_110 Hb_004032_380 Hb_004032_380 Hb_004143_130--Hb_004032_380 Hb_002316_150 Hb_002316_150 Hb_000270_670--Hb_002316_150 Hb_000172_110 Hb_000172_110 Hb_000270_670--Hb_000172_110 Hb_007441_220 Hb_007441_220 Hb_000270_670--Hb_007441_220 Hb_000866_120 Hb_000866_120 Hb_000270_670--Hb_000866_120 Hb_000270_670--Hb_004143_130 Hb_000174_220 Hb_000174_220 Hb_015807_070--Hb_000174_220 Hb_001021_170 Hb_001021_170 Hb_015807_070--Hb_001021_170 Hb_007416_180 Hb_007416_180 Hb_015807_070--Hb_007416_180 Hb_004684_010 Hb_004684_010 Hb_015807_070--Hb_004684_010 Hb_008500_010 Hb_008500_010 Hb_015807_070--Hb_008500_010 Hb_011491_010 Hb_011491_010 Hb_015807_070--Hb_011491_010 Hb_014267_010 Hb_014267_010 Hb_000318_390--Hb_014267_010 Hb_012656_030 Hb_012656_030 Hb_000318_390--Hb_012656_030 Hb_000803_260 Hb_000803_260 Hb_000318_390--Hb_000803_260 Hb_001205_230 Hb_001205_230 Hb_000318_390--Hb_001205_230 Hb_003440_050 Hb_003440_050 Hb_000318_390--Hb_003440_050 Hb_000540_060 Hb_000540_060 Hb_001967_030--Hb_000540_060 Hb_001967_030--Hb_014267_010 Hb_000960_100 Hb_000960_100 Hb_001967_030--Hb_000960_100 Hb_183963_030 Hb_183963_030 Hb_001967_030--Hb_183963_030 Hb_001967_030--Hb_000321_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.16924 5.92746 1.65068 1.90464 3.93652 4.13589
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.84242 2.33022 5.31203 3.63396 4.5252

CAGE analysis