Hb_000890_130

Information

Type -
Description -
Location Contig890: 130044-135883
Sequence    

Annotation

kegg
ID pda:103717815
description probable serine/threonine-protein phosphatase 2A regulatory subunit B'' subunit TON2
nr
ID XP_008804564.1
description PREDICTED: probable serine/threonine-protein phosphatase 2A regulatory subunit B'' subunit TON2 [Phoenix dactylifera]
swissprot
ID Q9FEE2
description Probable serine/threonine-protein phosphatase 2A regulatory subunit B'' subunit TON2 OS=Arabidopsis thaliana GN=TON2 PE=1 SV=1
trembl
ID A0A068TRF4
description Coffea canephora DH200=94 genomic scaffold, scaffold_3 OS=Coffea canephora GN=GSCOC_T00025850001 PE=4 SV=1
Gene Ontology
ID GO:0005634
description probable serine threonine-protein phosphatase 2a regulatory subunit b subunit ton2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_61605: 129915-135866
cDNA
(Sanger)
(ID:Location)		 004_D12.ab1: 129915-132607 , 038_O12.ab1: 129915-132585

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000890_130 0.0 - - PREDICTED: probable serine/threonine-protein phosphatase 2A regulatory subunit B'' subunit TON2 [Phoenix dactylifera]
2 Hb_002687_120 0.0643169721 - - PREDICTED: lipoyl synthase, chloroplastic [Jatropha curcas]
3 Hb_003119_060 0.0692405517 - - PREDICTED: dicarboxylate transporter 2.1, chloroplastic [Jatropha curcas]
4 Hb_002686_080 0.0802905415 transcription factor TF Family: PHD PREDICTED: PHD finger protein ING2-like [Jatropha curcas]
5 Hb_000028_520 0.0853178578 - - hypothetical protein L484_025125 [Morus notabilis]
6 Hb_000270_680 0.0885205514 - - hypothetical protein POPTR_0015s08420g [Populus trichocarpa]
7 Hb_002304_150 0.093786758 - - PREDICTED: protein IQ-DOMAIN 1-like isoform X1 [Jatropha curcas]
8 Hb_002874_180 0.0945070942 - - PREDICTED: protein AIG2-like isoform X1 [Jatropha curcas]
9 Hb_107879_010 0.0984129075 - - phosphoglycerate mutase, putative [Ricinus communis]
10 Hb_000340_130 0.0991227905 - - PREDICTED: uncharacterized protein LOC105650033 isoform X1 [Jatropha curcas]
11 Hb_000007_390 0.1016269359 - - hypothetical protein JCGZ_18250 [Jatropha curcas]
12 Hb_001723_150 0.1028482023 - - S-adenosylmethionine-dependent methyltransferase, putative [Ricinus communis]
13 Hb_000003_780 0.103301397 - - hexokinase [Manihot esculenta]
14 Hb_000260_470 0.1036369629 - - PREDICTED: uncharacterized protein LOC105649044 [Jatropha curcas]
15 Hb_000062_330 0.1037277888 - - unknown [Lotus japonicus]
16 Hb_000058_130 0.1046709423 - - PREDICTED: uncharacterized protein LOC105640884 [Jatropha curcas]
17 Hb_000088_190 0.1052610448 - - conserved hypothetical protein [Ricinus communis]
18 Hb_001799_030 0.10553673 - - PREDICTED: ELMO domain-containing protein C-like [Jatropha curcas]
19 Hb_171554_010 0.1056732337 - - PREDICTED: uncharacterized protein LOC105634071 [Jatropha curcas]
20 Hb_006132_090 0.1059258502 - - PREDICTED: origin of replication complex subunit 5 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000890_130 Hb_000890_130 Hb_002687_120 Hb_002687_120 Hb_000890_130--Hb_002687_120 Hb_003119_060 Hb_003119_060 Hb_000890_130--Hb_003119_060 Hb_002686_080 Hb_002686_080 Hb_000890_130--Hb_002686_080 Hb_000028_520 Hb_000028_520 Hb_000890_130--Hb_000028_520 Hb_000270_680 Hb_000270_680 Hb_000890_130--Hb_000270_680 Hb_002304_150 Hb_002304_150 Hb_000890_130--Hb_002304_150 Hb_002687_120--Hb_003119_060 Hb_003266_030 Hb_003266_030 Hb_002687_120--Hb_003266_030 Hb_002687_120--Hb_000028_520 Hb_000721_030 Hb_000721_030 Hb_002687_120--Hb_000721_030 Hb_006132_090 Hb_006132_090 Hb_002687_120--Hb_006132_090 Hb_003119_060--Hb_000028_520 Hb_003119_060--Hb_006132_090 Hb_002157_120 Hb_002157_120 Hb_003119_060--Hb_002157_120 Hb_000774_020 Hb_000774_020 Hb_003119_060--Hb_000774_020 Hb_001053_190 Hb_001053_190 Hb_002686_080--Hb_001053_190 Hb_003540_050 Hb_003540_050 Hb_002686_080--Hb_003540_050 Hb_000163_260 Hb_000163_260 Hb_002686_080--Hb_000163_260 Hb_016448_010 Hb_016448_010 Hb_002686_080--Hb_016448_010 Hb_003506_030 Hb_003506_030 Hb_002686_080--Hb_003506_030 Hb_000028_520--Hb_002157_120 Hb_018790_020 Hb_018790_020 Hb_000028_520--Hb_018790_020 Hb_000061_180 Hb_000061_180 Hb_000028_520--Hb_000061_180 Hb_001025_120 Hb_001025_120 Hb_000028_520--Hb_001025_120 Hb_000058_130 Hb_000058_130 Hb_000028_520--Hb_000058_130 Hb_000007_390 Hb_000007_390 Hb_000270_680--Hb_000007_390 Hb_000297_160 Hb_000297_160 Hb_000270_680--Hb_000297_160 Hb_000110_310 Hb_000110_310 Hb_000270_680--Hb_000110_310 Hb_107879_010 Hb_107879_010 Hb_000270_680--Hb_107879_010 Hb_003943_050 Hb_003943_050 Hb_000270_680--Hb_003943_050 Hb_001472_100 Hb_001472_100 Hb_000270_680--Hb_001472_100 Hb_001799_030 Hb_001799_030 Hb_002304_150--Hb_001799_030 Hb_012258_010 Hb_012258_010 Hb_002304_150--Hb_012258_010 Hb_002304_150--Hb_006132_090 Hb_000375_350 Hb_000375_350 Hb_002304_150--Hb_000375_350 Hb_002304_150--Hb_000110_310 Hb_003728_060 Hb_003728_060 Hb_002304_150--Hb_003728_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
15.0285 6.2885 34.2839 23.0262 10.4014 9.28793
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
12.9187 13.981 13.5133 13.016 16.7205

CAGE analysis