Hb_000890_150

Information

Type -
Description -
Location Contig890: 138007-140492
Sequence    

Annotation

kegg
ID pop:POPTR_0008s22800g
description zinc finger family protein
nr
ID XP_012069385.1
description PREDICTED: E3 ubiquitin-protein ligase Topors isoform X1 [Jatropha curcas]
swissprot
ID Q9NS56
description E3 ubiquitin-protein ligase Topors OS=Homo sapiens GN=TOPORS PE=1 SV=1
trembl
ID A0A067KYE1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02006 PE=4 SV=1
Gene Ontology
ID GO:0008270
description e3 ubiquitin-protein ligase topors

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000890_150 0.0 - - PREDICTED: E3 ubiquitin-protein ligase Topors isoform X1 [Jatropha curcas]
2 Hb_000359_060 0.0394055912 - - PREDICTED: WD repeat-containing protein 26-like [Jatropha curcas]
3 Hb_033594_080 0.0561438237 - - PREDICTED: uncharacterized protein LOC105639993 [Jatropha curcas]
4 Hb_011218_090 0.0623543839 - - PREDICTED: autophagy-related protein 18a [Jatropha curcas]
5 Hb_000049_210 0.06287818 - - PREDICTED: uncharacterized protein LOC105644460 [Jatropha curcas]
6 Hb_000787_020 0.0681820797 - - PREDICTED: glucose-6-phosphate/phosphate translocator 1, chloroplastic isoform X1 [Jatropha curcas]
7 Hb_004078_040 0.0687509697 - - PREDICTED: alkylated DNA repair protein alkB homolog 8 [Jatropha curcas]
8 Hb_168978_010 0.0727206629 - - PREDICTED: uncharacterized protein LOC105630751 [Jatropha curcas]
9 Hb_149985_010 0.0735859676 - - PREDICTED: transcription initiation factor IIB-2 [Cucumis sativus]
10 Hb_001511_060 0.0745853901 - - PREDICTED: sorting and assembly machinery component 50 homolog [Jatropha curcas]
11 Hb_000215_320 0.0752223614 - - phosphofructokinase [Hevea brasiliensis]
12 Hb_000220_100 0.0752873308 - - PREDICTED: uncharacterized PKHD-type hydroxylase At1g22950 [Jatropha curcas]
13 Hb_000393_020 0.0759060662 - - lipid binding protein, putative [Ricinus communis]
14 Hb_000856_010 0.0779713469 - - PREDICTED: uncharacterized protein LOC105640466 [Jatropha curcas]
15 Hb_000140_380 0.0783612857 - - PREDICTED: F-box/kelch-repeat protein At3g61590 [Jatropha curcas]
16 Hb_000173_410 0.0797156884 - - PREDICTED: BI1-like protein [Jatropha curcas]
17 Hb_000614_250 0.0800623307 - - PREDICTED: serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' theta isoform-like [Jatropha curcas]
18 Hb_000749_050 0.0826871502 - - mitochondrial thioredoxin [Hevea brasiliensis]
19 Hb_001473_160 0.0833391188 - - Vesicle-associated membrane protein, putative [Ricinus communis]
20 Hb_000430_020 0.0837819307 - - -

Gene co-expression network

sample Hb_000890_150 Hb_000890_150 Hb_000359_060 Hb_000359_060 Hb_000890_150--Hb_000359_060 Hb_033594_080 Hb_033594_080 Hb_000890_150--Hb_033594_080 Hb_011218_090 Hb_011218_090 Hb_000890_150--Hb_011218_090 Hb_000049_210 Hb_000049_210 Hb_000890_150--Hb_000049_210 Hb_000787_020 Hb_000787_020 Hb_000890_150--Hb_000787_020 Hb_004078_040 Hb_004078_040 Hb_000890_150--Hb_004078_040 Hb_000220_100 Hb_000220_100 Hb_000359_060--Hb_000220_100 Hb_000359_060--Hb_011218_090 Hb_149985_010 Hb_149985_010 Hb_000359_060--Hb_149985_010 Hb_168978_010 Hb_168978_010 Hb_000359_060--Hb_168978_010 Hb_000173_410 Hb_000173_410 Hb_000359_060--Hb_000173_410 Hb_033594_080--Hb_000359_060 Hb_033594_080--Hb_000220_100 Hb_002045_070 Hb_002045_070 Hb_033594_080--Hb_002045_070 Hb_000215_320 Hb_000215_320 Hb_033594_080--Hb_000215_320 Hb_004108_220 Hb_004108_220 Hb_033594_080--Hb_004108_220 Hb_011218_090--Hb_000049_210 Hb_004157_050 Hb_004157_050 Hb_011218_090--Hb_004157_050 Hb_011218_090--Hb_149985_010 Hb_000029_140 Hb_000029_140 Hb_011218_090--Hb_000029_140 Hb_005054_110 Hb_005054_110 Hb_000049_210--Hb_005054_110 Hb_000710_060 Hb_000710_060 Hb_000049_210--Hb_000710_060 Hb_000049_210--Hb_149985_010 Hb_008725_230 Hb_008725_230 Hb_000049_210--Hb_008725_230 Hb_003847_030 Hb_003847_030 Hb_000049_210--Hb_003847_030 Hb_084646_010 Hb_084646_010 Hb_000787_020--Hb_084646_010 Hb_000483_260 Hb_000483_260 Hb_000787_020--Hb_000483_260 Hb_155159_020 Hb_155159_020 Hb_000787_020--Hb_155159_020 Hb_000787_020--Hb_000049_210 Hb_000140_380 Hb_000140_380 Hb_000787_020--Hb_000140_380 Hb_004078_040--Hb_000359_060 Hb_000393_020 Hb_000393_020 Hb_004078_040--Hb_000393_020 Hb_004078_040--Hb_000173_410 Hb_004109_220 Hb_004109_220 Hb_004078_040--Hb_004109_220 Hb_000454_090 Hb_000454_090 Hb_004078_040--Hb_000454_090 Hb_000928_070 Hb_000928_070 Hb_004078_040--Hb_000928_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.16443 3.85849 2.78006 5.11304 2.1941 2.39644
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.6221 4.44118 4.96045 3.77294 2.41284

CAGE analysis