Hb_000890_180

Information

Type -
Description -
Location Contig890: 155208-155513
Sequence    

Annotation

kegg
ID rcu:RCOM_0680280
description glutaredoxin, grx, putative
nr
ID XP_002516883.1
description glutaredoxin, grx, putative [Ricinus communis]
swissprot
ID Q8L8Z8
description Monothiol glutaredoxin-S2 OS=Arabidopsis thaliana GN=GRXS2 PE=3 SV=1
trembl
ID B9RT14
description Glutaredoxin, grx, putative OS=Ricinus communis GN=RCOM_0680280 PE=4 SV=1
Gene Ontology
ID GO:0005623
description monothiol glutaredoxin-s2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000890_180 0.0 - - glutaredoxin, grx, putative [Ricinus communis]
2 Hb_032718_010 0.2279844967 desease resistance Gene Name: NB-ARC phosphoprotein phosphatase, putative [Ricinus communis]
3 Hb_000236_330 0.2435365642 - - PREDICTED: oligopeptide transporter 1-like isoform X1 [Jatropha curcas]
4 Hb_001842_110 0.2497489055 transcription factor TF Family: ERF CBF-like transcription factor, putative [Ricinus communis]
5 Hb_062447_010 0.2534294562 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570 [Jatropha curcas]
6 Hb_001123_250 0.2734564996 - - hypothetical protein POPTR_0001s13220g [Populus trichocarpa]
7 Hb_003159_150 0.2763188954 - - PREDICTED: glucan endo-1,3-beta-glucosidase 8 [Jatropha curcas]
8 Hb_009189_050 0.2898761886 - - PREDICTED: uncharacterized protein LOC105648080 [Jatropha curcas]
9 Hb_000345_110 0.2943516065 - - PREDICTED: uncharacterized protein LOC105647507 [Jatropha curcas]
10 Hb_114310_060 0.3004612928 transcription factor TF Family: ERF Dehydration-responsive element-binding protein 2G, putative [Ricinus communis]
11 Hb_004846_150 0.3005755605 - - hypothetical protein JCGZ_26968 [Jatropha curcas]
12 Hb_000371_120 0.3016292027 - - PREDICTED: calcium uniporter protein 2, mitochondrial-like [Jatropha curcas]
13 Hb_000538_170 0.3068388554 - - PREDICTED: butyrate--CoA ligase AAE11, peroxisomal-like [Jatropha curcas]
14 Hb_027010_030 0.3097915987 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
15 Hb_000365_340 0.314916306 - - PREDICTED: uncharacterized protein LOC105649067 [Jatropha curcas]
16 Hb_001226_170 0.3165538553 - - PREDICTED: putative nuclease HARBI1 [Jatropha curcas]
17 Hb_006816_520 0.3172135255 - - epoxide hydrolase, putative [Ricinus communis]
18 Hb_000120_090 0.3192062097 - - PREDICTED: phosphoinositide phospholipase C 4-like [Jatropha curcas]
19 Hb_004879_030 0.3207463334 - - PREDICTED: uncharacterized protein LOC105124685 [Populus euphratica]
20 Hb_001474_050 0.3222156174 transcription factor TF Family: C2C2-GATA GATA transcription factor, putative [Ricinus communis]

Gene co-expression network

sample Hb_000890_180 Hb_000890_180 Hb_032718_010 Hb_032718_010 Hb_000890_180--Hb_032718_010 Hb_000236_330 Hb_000236_330 Hb_000890_180--Hb_000236_330 Hb_001842_110 Hb_001842_110 Hb_000890_180--Hb_001842_110 Hb_062447_010 Hb_062447_010 Hb_000890_180--Hb_062447_010 Hb_001123_250 Hb_001123_250 Hb_000890_180--Hb_001123_250 Hb_003159_150 Hb_003159_150 Hb_000890_180--Hb_003159_150 Hb_027010_030 Hb_027010_030 Hb_032718_010--Hb_027010_030 Hb_026698_030 Hb_026698_030 Hb_032718_010--Hb_026698_030 Hb_007237_010 Hb_007237_010 Hb_032718_010--Hb_007237_010 Hb_004846_150 Hb_004846_150 Hb_032718_010--Hb_004846_150 Hb_034507_010 Hb_034507_010 Hb_032718_010--Hb_034507_010 Hb_000236_330--Hb_001842_110 Hb_000035_420 Hb_000035_420 Hb_000236_330--Hb_000035_420 Hb_012150_060 Hb_012150_060 Hb_000236_330--Hb_012150_060 Hb_002341_040 Hb_002341_040 Hb_000236_330--Hb_002341_040 Hb_003867_030 Hb_003867_030 Hb_000236_330--Hb_003867_030 Hb_001842_110--Hb_012150_060 Hb_003540_220 Hb_003540_220 Hb_001842_110--Hb_003540_220 Hb_006501_140 Hb_006501_140 Hb_001842_110--Hb_006501_140 Hb_001842_110--Hb_032718_010 Hb_012799_040 Hb_012799_040 Hb_062447_010--Hb_012799_040 Hb_001660_130 Hb_001660_130 Hb_062447_010--Hb_001660_130 Hb_000402_180 Hb_000402_180 Hb_062447_010--Hb_000402_180 Hb_002783_130 Hb_002783_130 Hb_062447_010--Hb_002783_130 Hb_134022_010 Hb_134022_010 Hb_062447_010--Hb_134022_010 Hb_000156_080 Hb_000156_080 Hb_062447_010--Hb_000156_080 Hb_001123_250--Hb_003159_150 Hb_009476_160 Hb_009476_160 Hb_001123_250--Hb_009476_160 Hb_000479_060 Hb_000479_060 Hb_001123_250--Hb_000479_060 Hb_001999_200 Hb_001999_200 Hb_001123_250--Hb_001999_200 Hb_000003_700 Hb_000003_700 Hb_001123_250--Hb_000003_700 Hb_000365_280 Hb_000365_280 Hb_001123_250--Hb_000365_280 Hb_002893_030 Hb_002893_030 Hb_003159_150--Hb_002893_030 Hb_003159_150--Hb_000365_280 Hb_004007_070 Hb_004007_070 Hb_003159_150--Hb_004007_070 Hb_000371_120 Hb_000371_120 Hb_003159_150--Hb_000371_120 Hb_000086_090 Hb_000086_090 Hb_003159_150--Hb_000086_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.680745 0.248327 0.418809 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.402971 0 0.438025

CAGE analysis