Hb_000890_210

Information

Type -
Description -
Location Contig890: 175867-182346
Sequence    

Annotation

kegg
ID egr:104415089
description serine/threonine-protein kinase PBS1
nr
ID XP_010024631.1
description PREDICTED: serine/threonine-protein kinase PBS1 isoform X1 [Eucalyptus grandis]
swissprot
ID Q9FE20
description Serine/threonine-protein kinase PBS1 OS=Arabidopsis thaliana GN=PBS1 PE=1 SV=1
trembl
ID R7WE62
description Serine/threonine-protein kinase PBS1 OS=Aegilops tauschii GN=F775_30766 PE=3 SV=1
Gene Ontology
ID GO:0005886
description serine threonine-protein kinase pbs1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_61617: 175845-182263
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000890_210 0.0 - - PREDICTED: serine/threonine-protein kinase PBS1 isoform X1 [Eucalyptus grandis]
2 Hb_000107_490 0.0578690353 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 5 [Jatropha curcas]
3 Hb_001341_170 0.0588380905 - - PREDICTED: general transcription factor IIH subunit 2 [Jatropha curcas]
4 Hb_002213_070 0.0651412508 - - epsilon-adaptin family protein [Populus trichocarpa]
5 Hb_000083_120 0.0694117794 - - transcription factor, putative [Ricinus communis]
6 Hb_004117_310 0.0701810924 - - PREDICTED: uncharacterized protein LOC105648043 [Jatropha curcas]
7 Hb_000245_040 0.0703465604 - - PREDICTED: uncharacterized protein LOC105631550 isoform X2 [Jatropha curcas]
8 Hb_012022_090 0.0704870438 - - PREDICTED: LIMR family protein At5g01460 [Gossypium raimondii]
9 Hb_004994_220 0.0705256384 - - PREDICTED: K(+) efflux antiporter 2, chloroplastic-like isoform X2 [Jatropha curcas]
10 Hb_000866_170 0.0712946596 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
11 Hb_003253_040 0.074667248 - - PREDICTED: uncharacterized protein At5g41620 [Jatropha curcas]
12 Hb_000395_190 0.0761476154 - - PREDICTED: F-box/LRR-repeat protein 7-like [Jatropha curcas]
13 Hb_002942_100 0.076570555 - - PREDICTED: pentatricopeptide repeat-containing protein At5g61990, mitochondrial [Jatropha curcas]
14 Hb_000665_060 0.0772126254 - - PREDICTED: trafficking protein particle complex II-specific subunit 120 homolog [Jatropha curcas]
15 Hb_004545_140 0.0785915334 - - hypothetical protein JCGZ_23405 [Jatropha curcas]
16 Hb_002111_070 0.0789669528 - - PREDICTED: protein S-acyltransferase 24 [Jatropha curcas]
17 Hb_000613_050 0.0794834842 - - PREDICTED: uncharacterized protein LOC105641544 isoform X2 [Jatropha curcas]
18 Hb_000009_560 0.0795078795 - - PREDICTED: extra-large guanine nucleotide-binding protein 1 [Jatropha curcas]
19 Hb_006938_080 0.0795097938 - - PREDICTED: U-box domain-containing protein 4 [Jatropha curcas]
20 Hb_000192_080 0.0801866536 - - PREDICTED: serine/threonine-protein kinase SAPK3 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000890_210 Hb_000890_210 Hb_000107_490 Hb_000107_490 Hb_000890_210--Hb_000107_490 Hb_001341_170 Hb_001341_170 Hb_000890_210--Hb_001341_170 Hb_002213_070 Hb_002213_070 Hb_000890_210--Hb_002213_070 Hb_000083_120 Hb_000083_120 Hb_000890_210--Hb_000083_120 Hb_004117_310 Hb_004117_310 Hb_000890_210--Hb_004117_310 Hb_000245_040 Hb_000245_040 Hb_000890_210--Hb_000245_040 Hb_000107_490--Hb_000245_040 Hb_000111_290 Hb_000111_290 Hb_000107_490--Hb_000111_290 Hb_010174_110 Hb_010174_110 Hb_000107_490--Hb_010174_110 Hb_003370_030 Hb_003370_030 Hb_000107_490--Hb_003370_030 Hb_004724_150 Hb_004724_150 Hb_000107_490--Hb_004724_150 Hb_001341_170--Hb_004724_150 Hb_000225_040 Hb_000225_040 Hb_001341_170--Hb_000225_040 Hb_000556_160 Hb_000556_160 Hb_001341_170--Hb_000556_160 Hb_011485_070 Hb_011485_070 Hb_001341_170--Hb_011485_070 Hb_010618_010 Hb_010618_010 Hb_001341_170--Hb_010618_010 Hb_000127_040 Hb_000127_040 Hb_002213_070--Hb_000127_040 Hb_001492_020 Hb_001492_020 Hb_002213_070--Hb_001492_020 Hb_000613_050 Hb_000613_050 Hb_002213_070--Hb_000613_050 Hb_002110_190 Hb_002110_190 Hb_002213_070--Hb_002110_190 Hb_000789_310 Hb_000789_310 Hb_002213_070--Hb_000789_310 Hb_000923_010 Hb_000923_010 Hb_000083_120--Hb_000923_010 Hb_005765_010 Hb_005765_010 Hb_000083_120--Hb_005765_010 Hb_000083_120--Hb_000111_290 Hb_011016_050 Hb_011016_050 Hb_000083_120--Hb_011016_050 Hb_004324_130 Hb_004324_130 Hb_000083_120--Hb_004324_130 Hb_001500_140 Hb_001500_140 Hb_000083_120--Hb_001500_140 Hb_000343_120 Hb_000343_120 Hb_004117_310--Hb_000343_120 Hb_004117_310--Hb_010174_110 Hb_004117_310--Hb_001341_170 Hb_004117_310--Hb_000107_490 Hb_002740_110 Hb_002740_110 Hb_004117_310--Hb_002740_110 Hb_000297_010 Hb_000297_010 Hb_000245_040--Hb_000297_010 Hb_000866_170 Hb_000866_170 Hb_000245_040--Hb_000866_170 Hb_000245_040--Hb_004724_150 Hb_006938_080 Hb_006938_080 Hb_000245_040--Hb_006938_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
18.2546 21.884 8.41563 22.1537 18.3232 25.6723
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
17.7728 15.3723 26.1661 25.7866 14.9481

CAGE analysis