Hb_000890_220

Information

Type transcription factor
Description TF Family: SNF2
Location Contig890: 184478-192638
Sequence    

Annotation

kegg
ID rcu:RCOM_0680240
description helicase, putative (EC:2.7.11.1)
nr
ID XP_012069393.1
description PREDICTED: putative chromatin-remodeling complex ATPase chain isoform X1 [Jatropha curcas]
swissprot
ID Q8RWY3
description Putative chromatin-remodeling complex ATPase chain OS=Arabidopsis thaliana GN=At3g06400 PE=2 SV=3
trembl
ID A0A067L7D7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02012 PE=4 SV=1
Gene Ontology
ID GO:0016589
description chromatin-remodeling complex atpase chain

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_61618: 184565-192553
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000890_220 0.0 transcription factor TF Family: SNF2 PREDICTED: putative chromatin-remodeling complex ATPase chain isoform X1 [Jatropha curcas]
2 Hb_000779_040 0.0437112679 - - PREDICTED: protein FLX-like 4 [Jatropha curcas]
3 Hb_000211_090 0.069409207 - - hypothetical protein PHAVU_011G023400g, partial [Phaseolus vulgaris]
4 Hb_013753_010 0.0712334854 - - PREDICTED: uncharacterized protein LOC105647969 isoform X1 [Jatropha curcas]
5 Hb_000792_110 0.0755295186 - - PREDICTED: E3 ubiquitin-protein ligase Hakai [Jatropha curcas]
6 Hb_101151_020 0.0767547581 - - DNA binding protein, putative [Ricinus communis]
7 Hb_012760_200 0.080450483 - - protein phsophatase-2a, putative [Ricinus communis]
8 Hb_002374_150 0.089904943 - - PREDICTED: SWI/SNF complex subunit SWI3C isoform X1 [Jatropha curcas]
9 Hb_025048_040 0.0905331609 - - PREDICTED: NAP1-related protein 2 [Jatropha curcas]
10 Hb_000608_340 0.0906999697 - - PREDICTED: putative RNA-binding protein Luc7-like 2 [Populus euphratica]
11 Hb_002918_070 0.0920127563 - - hypothetical protein POPTR_0011s05530g [Populus trichocarpa]
12 Hb_004531_090 0.0928759735 - - PREDICTED: VHS domain-containing protein At3g16270 [Jatropha curcas]
13 Hb_000212_280 0.0976021728 - - PREDICTED: putative RNA-binding protein Luc7-like 2 [Gossypium raimondii]
14 Hb_000185_090 0.1031508318 desease resistance Gene Name: CDC48_N PREDICTED: cell division cycle protein 48 homolog [Jatropha curcas]
15 Hb_000331_480 0.1033133879 transcription factor TF Family: GNAT PREDICTED: elongator complex protein 3 [Jatropha curcas]
16 Hb_003666_050 0.1035372006 - - PREDICTED: NASP-related protein sim3 [Jatropha curcas]
17 Hb_005028_010 0.1058157888 - - interferon-induced guanylate-binding protein, putative [Ricinus communis]
18 Hb_004032_350 0.1063464702 - - PREDICTED: splicing factor U2af small subunit B-like isoform X1 [Musa acuminata subsp. malaccensis]
19 Hb_001034_020 0.1064271732 - - PREDICTED: uncharacterized protein LOC105641929 [Jatropha curcas]
20 Hb_006275_050 0.1065282151 - - CP3 [Hevea brasiliensis]

Gene co-expression network

sample Hb_000890_220 Hb_000890_220 Hb_000779_040 Hb_000779_040 Hb_000890_220--Hb_000779_040 Hb_000211_090 Hb_000211_090 Hb_000890_220--Hb_000211_090 Hb_013753_010 Hb_013753_010 Hb_000890_220--Hb_013753_010 Hb_000792_110 Hb_000792_110 Hb_000890_220--Hb_000792_110 Hb_101151_020 Hb_101151_020 Hb_000890_220--Hb_101151_020 Hb_012760_200 Hb_012760_200 Hb_000890_220--Hb_012760_200 Hb_000779_040--Hb_000211_090 Hb_000608_340 Hb_000608_340 Hb_000779_040--Hb_000608_340 Hb_000779_040--Hb_000792_110 Hb_004531_090 Hb_004531_090 Hb_000779_040--Hb_004531_090 Hb_003673_020 Hb_003673_020 Hb_000779_040--Hb_003673_020 Hb_000211_090--Hb_000792_110 Hb_002918_070 Hb_002918_070 Hb_000211_090--Hb_002918_070 Hb_003666_050 Hb_003666_050 Hb_000211_090--Hb_003666_050 Hb_000211_090--Hb_003673_020 Hb_004032_350 Hb_004032_350 Hb_013753_010--Hb_004032_350 Hb_013753_010--Hb_012760_200 Hb_013753_010--Hb_101151_020 Hb_000331_480 Hb_000331_480 Hb_013753_010--Hb_000331_480 Hb_025048_040 Hb_025048_040 Hb_013753_010--Hb_025048_040 Hb_035360_010 Hb_035360_010 Hb_000792_110--Hb_035360_010 Hb_010189_010 Hb_010189_010 Hb_000792_110--Hb_010189_010 Hb_000792_110--Hb_012760_200 Hb_000016_280 Hb_000016_280 Hb_101151_020--Hb_000016_280 Hb_101151_020--Hb_000779_040 Hb_007348_030 Hb_007348_030 Hb_101151_020--Hb_007348_030 Hb_101151_020--Hb_012760_200 Hb_005028_010 Hb_005028_010 Hb_012760_200--Hb_005028_010 Hb_012760_200--Hb_004032_350 Hb_001034_020 Hb_001034_020 Hb_012760_200--Hb_001034_020 Hb_000212_280 Hb_000212_280 Hb_012760_200--Hb_000212_280 Hb_012760_200--Hb_000331_480
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
263.704 92.2018 17.5745 15.1636 273.966 279.591
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
65.9032 24.9593 37.311 58.9789 24.1441

CAGE analysis