Hb_000891_040

Information

Type -
Description -
Location Contig891: 44208-49605
Sequence    

Annotation

kegg
ID rcu:RCOM_1186440
description Histone deacetylase 2a, putative
nr
ID KDP34369.1
description hypothetical protein JCGZ_11252 [Jatropha curcas]
swissprot
ID Q8LJS2
description Histone deacetylase HDT1 OS=Glycine max GN=HDT1 PE=2 SV=1
trembl
ID A0A067KRB3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11252 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_61648: 44250-44357 , PASA_asmbl_61649: 44396-46477 , PASA_asmbl_61651: 46936-49518
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000891_040 0.0 - - hypothetical protein JCGZ_11252 [Jatropha curcas]
2 Hb_006637_060 0.1339093342 - - PREDICTED: uncharacterized protein LOC105649300 [Jatropha curcas]
3 Hb_007632_250 0.1348910796 - - conserved hypothetical protein [Ricinus communis]
4 Hb_119583_010 0.1361212965 - - 60S ribosomal protein L12A [Hevea brasiliensis]
5 Hb_000510_090 0.1370561032 - - 40S ribosomal protein S15 [Morus notabilis]
6 Hb_000442_100 0.1393831147 - - PREDICTED: staphylococcal-like nuclease CAN2 [Jatropha curcas]
7 Hb_181320_010 0.1410156499 - - PREDICTED: signal recognition particle 14 kDa protein [Jatropha curcas]
8 Hb_034585_030 0.1420700811 transcription factor TF Family: C2C2-Dof dof zinc finger protein DOF3.4 [Jatropha curcas]
9 Hb_003911_040 0.1466432091 - - PREDICTED: putative H/ACA ribonucleoprotein complex subunit 1-like protein 1 [Jatropha curcas]
10 Hb_012807_080 0.1467664996 - - hypothetical protein CICLE_v10028099mg [Citrus clementina]
11 Hb_004204_200 0.1483125762 - - PREDICTED: LYR motif-containing protein 4 [Jatropha curcas]
12 Hb_087762_010 0.1499727714 - - thioredoxin-like family protein [Hevea brasiliensis]
13 Hb_001818_080 0.1512514276 - - PREDICTED: F-box protein At3g58530 isoform X1 [Jatropha curcas]
14 Hb_155375_010 0.1516892718 - - hypothetical protein JCGZ_23388 [Jatropha curcas]
15 Hb_000041_220 0.1548686718 - - polyribonucleotide nucleotidyltransferase, putative [Ricinus communis]
16 Hb_003544_090 0.1568784154 - - PREDICTED: protein HIRA isoform X2 [Nelumbo nucifera]
17 Hb_000236_300 0.1571025961 - - PREDICTED: RNA-binding protein pno1-like [Jatropha curcas]
18 Hb_000088_020 0.1575619436 transcription factor TF Family: M-type hypothetical protein JCGZ_10946 [Jatropha curcas]
19 Hb_000995_050 0.157569299 - - 40S ribosomal protein S17C [Hevea brasiliensis]
20 Hb_000622_100 0.1584712307 - - PREDICTED: pre-rRNA-processing protein RIX1-like [Jatropha curcas]

Gene co-expression network

sample Hb_000891_040 Hb_000891_040 Hb_006637_060 Hb_006637_060 Hb_000891_040--Hb_006637_060 Hb_007632_250 Hb_007632_250 Hb_000891_040--Hb_007632_250 Hb_119583_010 Hb_119583_010 Hb_000891_040--Hb_119583_010 Hb_000510_090 Hb_000510_090 Hb_000891_040--Hb_000510_090 Hb_000442_100 Hb_000442_100 Hb_000891_040--Hb_000442_100 Hb_181320_010 Hb_181320_010 Hb_000891_040--Hb_181320_010 Hb_000847_070 Hb_000847_070 Hb_006637_060--Hb_000847_070 Hb_003638_140 Hb_003638_140 Hb_006637_060--Hb_003638_140 Hb_000176_110 Hb_000176_110 Hb_006637_060--Hb_000176_110 Hb_000003_090 Hb_000003_090 Hb_006637_060--Hb_000003_090 Hb_004502_030 Hb_004502_030 Hb_006637_060--Hb_004502_030 Hb_002681_140 Hb_002681_140 Hb_006637_060--Hb_002681_140 Hb_000617_320 Hb_000617_320 Hb_007632_250--Hb_000617_320 Hb_003911_040 Hb_003911_040 Hb_007632_250--Hb_003911_040 Hb_007632_250--Hb_119583_010 Hb_007632_250--Hb_004502_030 Hb_027892_060 Hb_027892_060 Hb_007632_250--Hb_027892_060 Hb_017895_050 Hb_017895_050 Hb_007632_250--Hb_017895_050 Hb_003633_130 Hb_003633_130 Hb_119583_010--Hb_003633_130 Hb_003106_130 Hb_003106_130 Hb_119583_010--Hb_003106_130 Hb_119583_010--Hb_004502_030 Hb_119583_010--Hb_000847_070 Hb_002997_170 Hb_002997_170 Hb_119583_010--Hb_002997_170 Hb_143813_010 Hb_143813_010 Hb_000510_090--Hb_143813_010 Hb_004724_100 Hb_004724_100 Hb_000510_090--Hb_004724_100 Hb_034585_030 Hb_034585_030 Hb_000510_090--Hb_034585_030 Hb_155375_010 Hb_155375_010 Hb_000510_090--Hb_155375_010 Hb_003777_270 Hb_003777_270 Hb_000510_090--Hb_003777_270 Hb_141131_010 Hb_141131_010 Hb_000510_090--Hb_141131_010 Hb_000442_100--Hb_004724_100 Hb_003086_110 Hb_003086_110 Hb_000442_100--Hb_003086_110 Hb_001818_080 Hb_001818_080 Hb_000442_100--Hb_001818_080 Hb_000442_100--Hb_034585_030 Hb_015026_120 Hb_015026_120 Hb_000442_100--Hb_015026_120 Hb_000442_100--Hb_000617_320 Hb_176117_010 Hb_176117_010 Hb_181320_010--Hb_176117_010 Hb_144898_010 Hb_144898_010 Hb_181320_010--Hb_144898_010 Hb_005016_150 Hb_005016_150 Hb_181320_010--Hb_005016_150 Hb_004662_010 Hb_004662_010 Hb_181320_010--Hb_004662_010 Hb_000270_500 Hb_000270_500 Hb_181320_010--Hb_000270_500
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
359.058 79.8688 39.1218 46.7234 189.364 619.182
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
185.079 299.401 69.2208 124.215 21.9443

CAGE analysis