Hb_000893_030

Information

Type -
Description -
Location Contig893: 101914-103658
Sequence    

Annotation

kegg
ID cam:101497268
description uncharacterized LOC101497268
nr
ID XP_012567732.1
description PREDICTED: uncharacterized protein LOC105851424 [Cicer arietinum]
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000893_030 0.0 - - PREDICTED: uncharacterized protein LOC105851424 [Cicer arietinum]
2 Hb_123304_010 0.1322428397 - - hypothetical protein MIMGU_mgv1a018902mg [Erythranthe guttata]
3 Hb_000172_500 0.1416120705 - - conserved hypothetical protein [Ricinus communis]
4 Hb_009164_020 0.1518630686 - - hypothetical protein PRUPE_ppa026212mg, partial [Prunus persica]
5 Hb_000701_070 0.2231805688 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
6 Hb_003767_020 0.2469702459 - - PREDICTED: MLP-like protein 43 [Fragaria vesca subsp. vesca]
7 Hb_000116_340 0.2472530155 - - PREDICTED: small acidic protein 1 [Jatropha curcas]
8 Hb_000160_340 0.2474328649 transcription factor TF Family: bHLH DNA binding protein, putative [Ricinus communis]
9 Hb_182291_020 0.2474755239 - - hypothetical protein CICLE_v10029871mg [Citrus clementina]
10 Hb_007970_030 0.2477058002 - - PREDICTED: 2-alkenal reductase (NADP(+)-dependent)-like isoform X1 [Jatropha curcas]
11 Hb_002893_140 0.2489833139 - - Glycine-rich cell wall structural protein precursor, putative [Ricinus communis]
12 Hb_000073_070 0.2534623079 - - -
13 Hb_000495_090 0.2537009005 - - hypothetical protein PRUPE_ppa022673mg [Prunus persica]
14 Hb_105632_010 0.2551115134 - - -
15 Hb_005743_020 0.2551159834 - - -
16 Hb_009554_020 0.263462811 - - PREDICTED: em-like protein GEA6 [Sesamum indicum]
17 Hb_001274_060 0.264440118 - - PREDICTED: uncharacterized protein LOC105802656 [Gossypium raimondii]
18 Hb_000380_030 0.266156319 - - Kiwellin, putative [Ricinus communis]
19 Hb_000787_120 0.2669853039 - - 2S sulfur-rich seed storage protein precursor large subunit, putative [Ricinus communis]
20 Hb_003633_110 0.2674193983 - - hypothetical protein PRUPE_ppa019329mg [Prunus persica]

Gene co-expression network

sample Hb_000893_030 Hb_000893_030 Hb_123304_010 Hb_123304_010 Hb_000893_030--Hb_123304_010 Hb_000172_500 Hb_000172_500 Hb_000893_030--Hb_000172_500 Hb_009164_020 Hb_009164_020 Hb_000893_030--Hb_009164_020 Hb_000701_070 Hb_000701_070 Hb_000893_030--Hb_000701_070 Hb_003767_020 Hb_003767_020 Hb_000893_030--Hb_003767_020 Hb_000116_340 Hb_000116_340 Hb_000893_030--Hb_000116_340 Hb_123304_010--Hb_000701_070 Hb_123304_010--Hb_009164_020 Hb_123304_010--Hb_000172_500 Hb_001032_040 Hb_001032_040 Hb_123304_010--Hb_001032_040 Hb_003658_030 Hb_003658_030 Hb_123304_010--Hb_003658_030 Hb_000172_500--Hb_009164_020 Hb_005015_040 Hb_005015_040 Hb_000172_500--Hb_005015_040 Hb_009554_020 Hb_009554_020 Hb_000172_500--Hb_009554_020 Hb_057597_020 Hb_057597_020 Hb_000172_500--Hb_057597_020 Hb_000019_090 Hb_000019_090 Hb_000172_500--Hb_000019_090 Hb_003780_040 Hb_003780_040 Hb_009164_020--Hb_003780_040 Hb_038601_010 Hb_038601_010 Hb_009164_020--Hb_038601_010 Hb_154114_020 Hb_154114_020 Hb_009164_020--Hb_154114_020 Hb_000701_070--Hb_003658_030 Hb_176121_010 Hb_176121_010 Hb_000701_070--Hb_176121_010 Hb_000175_550 Hb_000175_550 Hb_000701_070--Hb_000175_550 Hb_005214_020 Hb_005214_020 Hb_000701_070--Hb_005214_020 Hb_000160_340 Hb_000160_340 Hb_003767_020--Hb_000160_340 Hb_003767_020--Hb_000116_340 Hb_002893_140 Hb_002893_140 Hb_003767_020--Hb_002893_140 Hb_182291_020 Hb_182291_020 Hb_003767_020--Hb_182291_020 Hb_007970_030 Hb_007970_030 Hb_003767_020--Hb_007970_030 Hb_000073_070 Hb_000073_070 Hb_003767_020--Hb_000073_070 Hb_000116_340--Hb_182291_020 Hb_000116_340--Hb_007970_030 Hb_000116_340--Hb_000160_340 Hb_000116_340--Hb_002893_140 Hb_000116_340--Hb_000073_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0708727 0.28286 0 0 0.0466986
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis