Hb_000895_040

Information

Type -
Description -
Location Contig895: 69979-71662
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000895_040 0.0 - - -
2 Hb_010402_020 0.1392972381 - - PREDICTED: uncharacterized protein LOC104417027 [Eucalyptus grandis]
3 Hb_005470_010 0.1846880933 - - PREDICTED: protein-L-isoaspartate O-methyltransferase 1 isoform X2 [Jatropha curcas]
4 Hb_040506_010 0.2077688462 - - protein binding protein, putative [Ricinus communis]
5 Hb_000523_020 0.2338860609 - - PREDICTED: uncharacterized protein LOC105650610 [Jatropha curcas]
6 Hb_000270_400 0.2384960784 - - lipase, putative [Ricinus communis]
7 Hb_001195_110 0.2437252819 transcription factor TF Family: TUB phosphoric diester hydrolase, putative [Ricinus communis]
8 Hb_000707_080 0.2457094382 - - hypothetical protein AALP_AA4G156500, partial [Arabis alpina]
9 Hb_002388_060 0.2468432894 - - conserved hypothetical protein [Ricinus communis]
10 Hb_007545_210 0.2488034564 transcription factor TF Family: C2C2-Dof PREDICTED: cyclic dof factor 3-like [Jatropha curcas]
11 Hb_126669_010 0.2489498831 transcription factor TF Family: bHLH lMYC4 [Hevea brasiliensis]
12 Hb_003050_090 0.2513715704 - - lupus la ribonucleoprotein, putative [Ricinus communis]
13 Hb_000186_100 0.2528188903 - - PREDICTED: uncharacterized protein LOC105649284 isoform X1 [Jatropha curcas]
14 Hb_012150_070 0.2538421688 - - hypothetical protein JCGZ_04984 [Jatropha curcas]
15 Hb_032006_010 0.2586699984 - - PREDICTED: uncharacterized protein LOC105634374 [Jatropha curcas]
16 Hb_004254_040 0.2606055257 - - PREDICTED: uncharacterized protein LOC105650678 [Jatropha curcas]
17 Hb_000365_350 0.260655289 - - PREDICTED: uncharacterized protein LOC105649068 [Jatropha curcas]
18 Hb_007158_030 0.2608390372 - - UDP-glucosyltransferase, putative [Ricinus communis]
19 Hb_000033_050 0.2635210611 - - -
20 Hb_007809_060 0.2645810652 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH3 [Jatropha curcas]

Gene co-expression network

sample Hb_000895_040 Hb_000895_040 Hb_010402_020 Hb_010402_020 Hb_000895_040--Hb_010402_020 Hb_005470_010 Hb_005470_010 Hb_000895_040--Hb_005470_010 Hb_040506_010 Hb_040506_010 Hb_000895_040--Hb_040506_010 Hb_000523_020 Hb_000523_020 Hb_000895_040--Hb_000523_020 Hb_000270_400 Hb_000270_400 Hb_000895_040--Hb_000270_400 Hb_001195_110 Hb_001195_110 Hb_000895_040--Hb_001195_110 Hb_010402_020--Hb_040506_010 Hb_000186_100 Hb_000186_100 Hb_010402_020--Hb_000186_100 Hb_010402_020--Hb_001195_110 Hb_002388_060 Hb_002388_060 Hb_010402_020--Hb_002388_060 Hb_000009_640 Hb_000009_640 Hb_010402_020--Hb_000009_640 Hb_005470_010--Hb_040506_010 Hb_000033_060 Hb_000033_060 Hb_005470_010--Hb_000033_060 Hb_072912_010 Hb_072912_010 Hb_005470_010--Hb_072912_010 Hb_002960_120 Hb_002960_120 Hb_005470_010--Hb_002960_120 Hb_009193_130 Hb_009193_130 Hb_005470_010--Hb_009193_130 Hb_040506_010--Hb_000186_100 Hb_007382_040 Hb_007382_040 Hb_040506_010--Hb_007382_040 Hb_000733_040 Hb_000733_040 Hb_040506_010--Hb_000733_040 Hb_004307_040 Hb_004307_040 Hb_040506_010--Hb_004307_040 Hb_000523_020--Hb_000270_400 Hb_126669_010 Hb_126669_010 Hb_000523_020--Hb_126669_010 Hb_007545_210 Hb_007545_210 Hb_000523_020--Hb_007545_210 Hb_000523_020--Hb_002388_060 Hb_170116_010 Hb_170116_010 Hb_000523_020--Hb_170116_010 Hb_002627_060 Hb_002627_060 Hb_000523_020--Hb_002627_060 Hb_000270_400--Hb_007545_210 Hb_000270_400--Hb_126669_010 Hb_004254_040 Hb_004254_040 Hb_000270_400--Hb_004254_040 Hb_000172_610 Hb_000172_610 Hb_000270_400--Hb_000172_610 Hb_000270_400--Hb_002627_060 Hb_012807_120 Hb_012807_120 Hb_001195_110--Hb_012807_120 Hb_002025_230 Hb_002025_230 Hb_001195_110--Hb_002025_230 Hb_000365_350 Hb_000365_350 Hb_001195_110--Hb_000365_350 Hb_011316_030 Hb_011316_030 Hb_001195_110--Hb_011316_030 Hb_001140_080 Hb_001140_080 Hb_001195_110--Hb_001140_080 Hb_000138_010 Hb_000138_010 Hb_001195_110--Hb_000138_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.47857 0.19378 0 0 0.600747 0.581737
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.466786 0 0.500093 0 0

CAGE analysis