Hb_000896_040

Information

Type -
Description -
Location Contig896: 38226-40980
Sequence    

Annotation

kegg
ID pvu:PHAVU_009G095600g
description hypothetical protein
nr
ID CDY06600.1
description BnaC02g13240D [Brassica napus]
swissprot
ID Q8H156
description GTP-binding nuclear protein Ran-3 OS=Arabidopsis thaliana GN=RAN3 PE=1 SV=2
trembl
ID A0A078EX10
description BnaC02g13240D protein OS=Brassica napus GN=BnaC02g13240D PE=4 SV=1
Gene Ontology
ID GO:0005634
description gtp-binding nuclear protein ran-3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_61761: 35016-37236 , PASA_asmbl_61762: 34748-37236 , PASA_asmbl_61763: 38213-40820
cDNA
(Sanger)
(ID:Location)		 003_I07.ab1: 38213-40572 , 040_F04.ab1: 38213-40572

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000896_040 0.0 - - BnaC02g13240D [Brassica napus]
2 Hb_003098_020 0.0827307599 - - 40S ribosomal protein S5B [Hevea brasiliensis]
3 Hb_000922_040 0.0930914993 - - PREDICTED: CASP-like protein 4A3 [Jatropha curcas]
4 Hb_180074_010 0.0936340887 - - Single-stranded DNA-binding protein, mitochondrial precursor, putative [Ricinus communis]
5 Hb_000417_260 0.0937010952 - - protein with unknown function [Ricinus communis]
6 Hb_091433_020 0.0946522333 - - ribosomal RNA methyltransferase, putative [Ricinus communis]
7 Hb_004672_010 0.0949107099 - - ecotropic viral integration site, putative [Ricinus communis]
8 Hb_000302_280 0.0971048954 - - hypothetical protein ZEAMMB73_772347 [Zea mays]
9 Hb_005269_080 0.0974020608 - - protein with unknown function [Ricinus communis]
10 Hb_006915_040 0.0975504002 - - PREDICTED: prefoldin subunit 6 [Eucalyptus grandis]
11 Hb_000377_120 0.0990173201 - - PREDICTED: acyl carrier protein 3, mitochondrial isoform X2 [Jatropha curcas]
12 Hb_000413_280 0.1001642896 - - PREDICTED: probable UDP-3-O-acylglucosamine N-acyltransferase 2, mitochondrial [Jatropha curcas]
13 Hb_186982_040 0.1012899177 - - hypothetical protein PHAVU_003G089200g [Phaseolus vulgaris]
14 Hb_033642_080 0.1015556913 - - V-type proton ATPase subunit E [Hevea brasiliensis]
15 Hb_000384_120 0.1028025755 transcription factor TF Family: Whirly PREDICTED: single-stranded DNA-bindig protein WHY2, mitochondrial [Jatropha curcas]
16 Hb_000136_350 0.1047886604 - - PREDICTED: 40S ribosomal protein S5 [Nomascus leucogenys]
17 Hb_000163_050 0.1064144658 - - SPLICEOSOMAL protein U1A [Populus trichocarpa]
18 Hb_005305_150 0.1073769382 - - PREDICTED: 40S ribosomal protein S2-4-like [Jatropha curcas]
19 Hb_009075_010 0.107807822 - - 60S ribosomal protein L10B [Hevea brasiliensis]
20 Hb_011671_440 0.1098962764 - - ATP-dependent DNA helicase pcrA, putative [Ricinus communis]

Gene co-expression network

sample Hb_000896_040 Hb_000896_040 Hb_003098_020 Hb_003098_020 Hb_000896_040--Hb_003098_020 Hb_000922_040 Hb_000922_040 Hb_000896_040--Hb_000922_040 Hb_180074_010 Hb_180074_010 Hb_000896_040--Hb_180074_010 Hb_000417_260 Hb_000417_260 Hb_000896_040--Hb_000417_260 Hb_091433_020 Hb_091433_020 Hb_000896_040--Hb_091433_020 Hb_004672_010 Hb_004672_010 Hb_000896_040--Hb_004672_010 Hb_005305_150 Hb_005305_150 Hb_003098_020--Hb_005305_150 Hb_186982_040 Hb_186982_040 Hb_003098_020--Hb_186982_040 Hb_000136_350 Hb_000136_350 Hb_003098_020--Hb_000136_350 Hb_000210_120 Hb_000210_120 Hb_003098_020--Hb_000210_120 Hb_005914_170 Hb_005914_170 Hb_003098_020--Hb_005914_170 Hb_005269_080 Hb_005269_080 Hb_000922_040--Hb_005269_080 Hb_000384_120 Hb_000384_120 Hb_000922_040--Hb_000384_120 Hb_001222_080 Hb_001222_080 Hb_000922_040--Hb_001222_080 Hb_002016_080 Hb_002016_080 Hb_000922_040--Hb_002016_080 Hb_000701_100 Hb_000701_100 Hb_000922_040--Hb_000701_100 Hb_001410_060 Hb_001410_060 Hb_000922_040--Hb_001410_060 Hb_033642_080 Hb_033642_080 Hb_180074_010--Hb_033642_080 Hb_180074_010--Hb_091433_020 Hb_011671_440 Hb_011671_440 Hb_180074_010--Hb_011671_440 Hb_005391_030 Hb_005391_030 Hb_180074_010--Hb_005391_030 Hb_006478_150 Hb_006478_150 Hb_180074_010--Hb_006478_150 Hb_005278_040 Hb_005278_040 Hb_000417_260--Hb_005278_040 Hb_001005_080 Hb_001005_080 Hb_000417_260--Hb_001005_080 Hb_000417_260--Hb_000384_120 Hb_000417_260--Hb_004672_010 Hb_001008_090 Hb_001008_090 Hb_000417_260--Hb_001008_090 Hb_001481_140 Hb_001481_140 Hb_000417_260--Hb_001481_140 Hb_000417_360 Hb_000417_360 Hb_091433_020--Hb_000417_360 Hb_091433_020--Hb_033642_080 Hb_004767_080 Hb_004767_080 Hb_091433_020--Hb_004767_080 Hb_000731_190 Hb_000731_190 Hb_091433_020--Hb_000731_190 Hb_000496_120 Hb_000496_120 Hb_091433_020--Hb_000496_120 Hb_011671_100 Hb_011671_100 Hb_091433_020--Hb_011671_100 Hb_005137_060 Hb_005137_060 Hb_004672_010--Hb_005137_060 Hb_000046_350 Hb_000046_350 Hb_004672_010--Hb_000046_350 Hb_008232_010 Hb_008232_010 Hb_004672_010--Hb_008232_010 Hb_000072_180 Hb_000072_180 Hb_004672_010--Hb_000072_180 Hb_027654_050 Hb_027654_050 Hb_004672_010--Hb_027654_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
64.3216 44.8602 104.923 182.104 36.4964 106.629
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
214.746 370.305 205.321 217.24 73.3662

CAGE analysis