Hb_000896_050

Information

Type -
Description -
Location Contig896: 44308-46702
Sequence    

Annotation

kegg
ID pop:POPTR_0006s26680g
description POPTRDRAFT_763466; agenet domain-containing family protein
nr
ID XP_012076608.1
description PREDICTED: uncharacterized protein LOC105637668 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KBL9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07192 PE=3 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_61764: 44407-45100
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000896_050 0.0 - - PREDICTED: uncharacterized protein LOC105637668 [Jatropha curcas]
2 Hb_003159_050 0.0861617058 - - PREDICTED: 3-hydroxyisobutyryl-CoA hydrolase-like protein 3, mitochondrial isoform X1 [Jatropha curcas]
3 Hb_011537_060 0.0873200413 - - UPF0061 protein azo1574 [Morus notabilis]
4 Hb_007933_040 0.0890990225 - - PREDICTED: probable beta-D-xylosidase 6 isoform X2 [Jatropha curcas]
5 Hb_000062_510 0.0904054006 - - PREDICTED: NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial [Jatropha curcas]
6 Hb_007741_120 0.0914295611 - - PREDICTED: phosphatidate cytidylyltransferase 4, chloroplastic [Jatropha curcas]
7 Hb_001975_150 0.0932738353 - - PREDICTED: RINT1-like protein MAG2L [Jatropha curcas]
8 Hb_084670_010 0.0970751601 - - PREDICTED: thiamine biosynthetic bifunctional enzyme TH1, chloroplastic isoform X1 [Jatropha curcas]
9 Hb_012733_040 0.0992245653 - - ATP-dependent clp protease ATP-binding subunit clpx, putative [Ricinus communis]
10 Hb_055062_040 0.0997211485 - - ceramidase, putative [Ricinus communis]
11 Hb_106890_010 0.1028573718 - - PREDICTED: probable starch synthase 4, chloroplastic/amyloplastic isoform X2 [Jatropha curcas]
12 Hb_011485_060 0.1030123387 transcription factor TF Family: CAMTA PREDICTED: calmodulin-binding transcription activator 3 [Jatropha curcas]
13 Hb_006059_030 0.1033287351 - - glutamate dehydrogenase, putative [Ricinus communis]
14 Hb_004957_030 0.1045210923 - - hydroxyproline-rich glycoprotein [Populus trichocarpa]
15 Hb_023988_030 0.1052497366 - - PREDICTED: transmembrane protein 19 [Vitis vinifera]
16 Hb_003106_190 0.1080409218 - - Mannosyl-oligosaccharide 1,2-alpha-mannosidase IA, putative [Ricinus communis]
17 Hb_000909_080 0.1090120592 - - PREDICTED: inosine-5'-monophosphate dehydrogenase 2-like [Jatropha curcas]
18 Hb_000768_160 0.1102990539 - - PREDICTED: uncharacterized protein LOC105632531 [Jatropha curcas]
19 Hb_009615_060 0.1104053237 - - PREDICTED: prolyl endopeptidase-like [Jatropha curcas]
20 Hb_005260_030 0.1107822595 - - PREDICTED: uncharacterized protein LOC105633782 [Jatropha curcas]

Gene co-expression network

sample Hb_000896_050 Hb_000896_050 Hb_003159_050 Hb_003159_050 Hb_000896_050--Hb_003159_050 Hb_011537_060 Hb_011537_060 Hb_000896_050--Hb_011537_060 Hb_007933_040 Hb_007933_040 Hb_000896_050--Hb_007933_040 Hb_000062_510 Hb_000062_510 Hb_000896_050--Hb_000062_510 Hb_007741_120 Hb_007741_120 Hb_000896_050--Hb_007741_120 Hb_001975_150 Hb_001975_150 Hb_000896_050--Hb_001975_150 Hb_001269_600 Hb_001269_600 Hb_003159_050--Hb_001269_600 Hb_003159_050--Hb_007933_040 Hb_012733_040 Hb_012733_040 Hb_003159_050--Hb_012733_040 Hb_003159_050--Hb_007741_120 Hb_012393_030 Hb_012393_030 Hb_003159_050--Hb_012393_030 Hb_009615_060 Hb_009615_060 Hb_003159_050--Hb_009615_060 Hb_011537_060--Hb_001975_150 Hb_011537_060--Hb_007933_040 Hb_004218_180 Hb_004218_180 Hb_011537_060--Hb_004218_180 Hb_005489_040 Hb_005489_040 Hb_011537_060--Hb_005489_040 Hb_003340_010 Hb_003340_010 Hb_011537_060--Hb_003340_010 Hb_002874_110 Hb_002874_110 Hb_011537_060--Hb_002874_110 Hb_007933_040--Hb_007741_120 Hb_106890_010 Hb_106890_010 Hb_007933_040--Hb_106890_010 Hb_007933_040--Hb_003340_010 Hb_002686_200 Hb_002686_200 Hb_007933_040--Hb_002686_200 Hb_000359_210 Hb_000359_210 Hb_000062_510--Hb_000359_210 Hb_003106_190 Hb_003106_190 Hb_000062_510--Hb_003106_190 Hb_000062_510--Hb_007741_120 Hb_023988_030 Hb_023988_030 Hb_000062_510--Hb_023988_030 Hb_000062_510--Hb_003159_050 Hb_006573_150 Hb_006573_150 Hb_007741_120--Hb_006573_150 Hb_007741_120--Hb_106890_010 Hb_003355_010 Hb_003355_010 Hb_007741_120--Hb_003355_010 Hb_001242_120 Hb_001242_120 Hb_007741_120--Hb_001242_120 Hb_000504_180 Hb_000504_180 Hb_001975_150--Hb_000504_180 Hb_000185_220 Hb_000185_220 Hb_001975_150--Hb_000185_220 Hb_001975_150--Hb_004218_180 Hb_000635_060 Hb_000635_060 Hb_001975_150--Hb_000635_060 Hb_003517_070 Hb_003517_070 Hb_001975_150--Hb_003517_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.34728 1.49966 2.65696 3.22167 1.00391 1.92493
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.87259 1.61272 1.65638 4.90037 5.91387

CAGE analysis