Hb_000896_060

Information

Type -
Description -
Location Contig896: 50161-52781
Sequence    

Annotation

kegg
ID rcu:RCOM_0924900
description pentatricopeptide repeat-containing protein, putative
nr
ID XP_002515553.1
description pentatricopeptide repeat-containing protein, putative [Ricinus communis]
swissprot
ID Q9SV46
description Pentatricopeptide repeat-containing protein At3g54980, mitochondrial OS=Arabidopsis thaliana GN=At3g54980 PE=2 SV=1
trembl
ID B9RP84
description Pentatricopeptide repeat-containing protein, putative OS=Ricinus communis GN=RCOM_0924900 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_61766: 50366-50543 , PASA_asmbl_61769: 51379-52069 , PASA_asmbl_61770: 52247-52610
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000896_060 0.0 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
2 Hb_000526_060 0.0488666483 - - PREDICTED: clustered mitochondria protein [Jatropha curcas]
3 Hb_014834_060 0.0561991903 - - PREDICTED: uncharacterized protein LOC105632277 isoform X1 [Jatropha curcas]
4 Hb_000117_070 0.0597894729 - - PREDICTED: branchpoint-bridging protein [Jatropha curcas]
5 Hb_044653_020 0.0639027866 transcription factor, desease resistance TF Family: GNAT, Gene Name: NB-ARC hypothetical protein JCGZ_20174 [Jatropha curcas]
6 Hb_012368_100 0.0661635666 - - PREDICTED: uncharacterized protein LOC105637426 [Jatropha curcas]
7 Hb_000123_350 0.070080246 desease resistance Gene Name: ABC_membrane ABC transporter family protein [Hevea brasiliensis]
8 Hb_000703_130 0.0733247632 - - PREDICTED: ATP-dependent RNA helicase DHX36 [Jatropha curcas]
9 Hb_002282_060 0.0772401227 transcription factor TF Family: bZIP DNA binding protein, putative [Ricinus communis]
10 Hb_155159_010 0.0809425994 - - PREDICTED: RNA polymerase II C-terminal domain phosphatase-like 1 [Jatropha curcas]
11 Hb_002073_280 0.0852991336 - - PREDICTED: phospholipid-transporting ATPase 3 isoform X1 [Jatropha curcas]
12 Hb_005188_040 0.0864259685 - - PREDICTED: protein furry homolog-like [Nicotiana sylvestris]
13 Hb_012082_010 0.0864626575 - - PREDICTED: transcription factor GTE4 isoform X1 [Jatropha curcas]
14 Hb_000949_010 0.0866861282 - - PREDICTED: regulator of nonsense transcripts UPF2 [Jatropha curcas]
15 Hb_052764_060 0.0879187442 - - XPA-binding protein, putative [Ricinus communis]
16 Hb_007818_030 0.0891660644 - - PREDICTED: transcriptional corepressor SEUSS-like [Jatropha curcas]
17 Hb_000265_090 0.0899656352 - - PREDICTED: flowering time control protein FPA [Jatropha curcas]
18 Hb_000094_320 0.0918058254 - - hypothetical protein JCGZ_04407 [Jatropha curcas]
19 Hb_004785_030 0.0919153797 transcription factor TF Family: bZIP PREDICTED: transcription factor VIP1 [Jatropha curcas]
20 Hb_002387_070 0.0928574602 - - PREDICTED: putative pentatricopeptide repeat-containing protein At1g77010, mitochondrial [Jatropha curcas]

Gene co-expression network

sample Hb_000896_060 Hb_000896_060 Hb_000526_060 Hb_000526_060 Hb_000896_060--Hb_000526_060 Hb_014834_060 Hb_014834_060 Hb_000896_060--Hb_014834_060 Hb_000117_070 Hb_000117_070 Hb_000896_060--Hb_000117_070 Hb_044653_020 Hb_044653_020 Hb_000896_060--Hb_044653_020 Hb_012368_100 Hb_012368_100 Hb_000896_060--Hb_012368_100 Hb_000123_350 Hb_000123_350 Hb_000896_060--Hb_000123_350 Hb_000526_060--Hb_000117_070 Hb_007818_030 Hb_007818_030 Hb_000526_060--Hb_007818_030 Hb_120470_010 Hb_120470_010 Hb_000526_060--Hb_120470_010 Hb_155159_010 Hb_155159_010 Hb_000526_060--Hb_155159_010 Hb_000703_130 Hb_000703_130 Hb_000526_060--Hb_000703_130 Hb_005188_040 Hb_005188_040 Hb_014834_060--Hb_005188_040 Hb_024185_010 Hb_024185_010 Hb_014834_060--Hb_024185_010 Hb_014834_060--Hb_000526_060 Hb_014834_060--Hb_000703_130 Hb_000836_020 Hb_000836_020 Hb_014834_060--Hb_000836_020 Hb_000117_070--Hb_012368_100 Hb_000117_070--Hb_044653_020 Hb_000117_070--Hb_120470_010 Hb_000117_070--Hb_000703_130 Hb_044653_020--Hb_012368_100 Hb_004785_030 Hb_004785_030 Hb_044653_020--Hb_004785_030 Hb_044653_020--Hb_005188_040 Hb_002387_070 Hb_002387_070 Hb_044653_020--Hb_002387_070 Hb_012368_100--Hb_002387_070 Hb_012368_100--Hb_004785_030 Hb_012368_100--Hb_000703_130 Hb_002485_040 Hb_002485_040 Hb_000123_350--Hb_002485_040 Hb_000123_350--Hb_014834_060 Hb_000123_350--Hb_000526_060 Hb_003060_090 Hb_003060_090 Hb_000123_350--Hb_003060_090 Hb_012082_010 Hb_012082_010 Hb_000123_350--Hb_012082_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.44434 5.04222 1.41811 1.29931 2.09461 1.83631
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.545035 0.670134 0.971588 1.60693 1.85318

CAGE analysis