Hb_000896_120

Information

Type -
Description -
Location Contig896: 94694-99762
Sequence    

Annotation

kegg
ID pop:POPTR_0018s01470g
description POPTRDRAFT_809106; hypothetical protein
nr
ID XP_011026469.1
description PREDICTED: acyl-protein thioesterase 2-like [Populus euphratica]
swissprot
ID O95372
description Acyl-protein thioesterase 2 OS=Homo sapiens GN=LYPLA2 PE=1 SV=1
trembl
ID B9IKU8
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0018s01470g PE=4 SV=1
Gene Ontology
ID GO:0052689
description acyl-protein thioesterase 2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_61775: 94016-96628 , PASA_asmbl_61776: 99415-99714
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000896_120 0.0 - - PREDICTED: acyl-protein thioesterase 2-like [Populus euphratica]
2 Hb_183086_040 0.0840755709 - - cytochrome b5 isoform Cb5-A [Vernicia fordii]
3 Hb_000922_100 0.0920407504 - - PREDICTED: putative exosome complex component rrp40 [Jatropha curcas]
4 Hb_000300_390 0.095216286 - - BTB/POZ domain-containing protein KCTD9, putative [Ricinus communis]
5 Hb_000215_180 0.0977709404 - - hypothetical protein 17 [Hevea brasiliensis]
6 Hb_001232_140 0.1030283714 - - PREDICTED: uncharacterized protein LOC105634966 [Jatropha curcas]
7 Hb_005663_120 0.1076568079 - - PREDICTED: uncharacterized protein LOC105635265 [Jatropha curcas]
8 Hb_000398_160 0.112891005 - - GDP-mannose transporter, putative [Ricinus communis]
9 Hb_152021_010 0.1141398475 - - PREDICTED: uncharacterized protein LOC105639312 isoform X2 [Jatropha curcas]
10 Hb_000236_150 0.1152258134 - - glycine-rich RNA-binding protein, putative [Ricinus communis]
11 Hb_000224_090 0.1155365718 - - Eukaryotic translation initiation factor 1A [Gossypium arboreum]
12 Hb_006831_030 0.1209789395 - - PREDICTED: ras-related protein RABB1c [Fragaria vesca subsp. vesca]
13 Hb_000722_040 0.1217858657 - - -
14 Hb_004333_030 0.1226820755 - - PREDICTED: vacuolar protein sorting-associated protein 26A [Jatropha curcas]
15 Hb_017862_010 0.12279693 - - PREDICTED: signal recognition particle 19 kDa protein-like [Jatropha curcas]
16 Hb_001377_380 0.1237521835 - - PREDICTED: uncharacterized protein LOC105642831 [Jatropha curcas]
17 Hb_001785_040 0.1239288167 - - cytochrome b5 isoform Cb5-A [Vernicia fordii]
18 Hb_002316_120 0.1243715941 - - hypothetical protein POPTR_0015s08460g [Populus trichocarpa]
19 Hb_000789_110 0.1253769088 - - RecName: Full=Profilin-1; AltName: Full=Pollen allergen Hev b 8.0101; AltName: Allergen=Hev b 8.0101 [Hevea brasiliensis]
20 Hb_032969_030 0.1260497504 - - calmodulin binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_000896_120 Hb_000896_120 Hb_183086_040 Hb_183086_040 Hb_000896_120--Hb_183086_040 Hb_000922_100 Hb_000922_100 Hb_000896_120--Hb_000922_100 Hb_000300_390 Hb_000300_390 Hb_000896_120--Hb_000300_390 Hb_000215_180 Hb_000215_180 Hb_000896_120--Hb_000215_180 Hb_001232_140 Hb_001232_140 Hb_000896_120--Hb_001232_140 Hb_005663_120 Hb_005663_120 Hb_000896_120--Hb_005663_120 Hb_183086_040--Hb_000922_100 Hb_000780_210 Hb_000780_210 Hb_183086_040--Hb_000780_210 Hb_183086_040--Hb_000215_180 Hb_000085_330 Hb_000085_330 Hb_183086_040--Hb_000085_330 Hb_000224_090 Hb_000224_090 Hb_183086_040--Hb_000224_090 Hb_000922_100--Hb_000215_180 Hb_000329_330 Hb_000329_330 Hb_000922_100--Hb_000329_330 Hb_000722_040 Hb_000722_040 Hb_000922_100--Hb_000722_040 Hb_001545_060 Hb_001545_060 Hb_000922_100--Hb_001545_060 Hb_002316_120 Hb_002316_120 Hb_000300_390--Hb_002316_120 Hb_000789_110 Hb_000789_110 Hb_000300_390--Hb_000789_110 Hb_000300_390--Hb_005663_120 Hb_012539_020 Hb_012539_020 Hb_000300_390--Hb_012539_020 Hb_120823_010 Hb_120823_010 Hb_000300_390--Hb_120823_010 Hb_032969_030 Hb_032969_030 Hb_000300_390--Hb_032969_030 Hb_000215_180--Hb_000780_210 Hb_001377_380 Hb_001377_380 Hb_000215_180--Hb_001377_380 Hb_000106_100 Hb_000106_100 Hb_000215_180--Hb_000106_100 Hb_001135_210 Hb_001135_210 Hb_001232_140--Hb_001135_210 Hb_001232_140--Hb_005663_120 Hb_001232_140--Hb_032969_030 Hb_000099_130 Hb_000099_130 Hb_001232_140--Hb_000099_130 Hb_001157_010 Hb_001157_010 Hb_001232_140--Hb_001157_010 Hb_005663_120--Hb_012539_020 Hb_005663_120--Hb_002316_120 Hb_005663_120--Hb_032969_030 Hb_005527_040 Hb_005527_040 Hb_005663_120--Hb_005527_040 Hb_000389_080 Hb_000389_080 Hb_005663_120--Hb_000389_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.07021 2.83277 1.32548 7.22954 2.97653 5.85588
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
27.1728 33.7136 22.0191 5.72595 0.998239

CAGE analysis