Hb_000898_040

Information

Type -
Description -
Location Contig898: 91606-106492
Sequence    

Annotation

kegg
ID rcu:RCOM_0282300
description ankyrin repeat-containing protein, putative
nr
ID XP_002533218.1
description ankyrin repeat-containing protein, putative [Ricinus communis]
swissprot
ID Q6KAE5
description Probable E3 ubiquitin-protein ligase XBOS32 OS=Oryza sativa subsp. japonica GN=XBOS32 PE=2 SV=2
trembl
ID B9T4P9
description Ankyrin repeat-containing protein, putative OS=Ricinus communis GN=RCOM_0282300 PE=4 SV=1
Gene Ontology
ID GO:0004842
description probable e3 ubiquitin-protein ligase xbos32

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_61789: 93391-106416 , PASA_asmbl_61794: 92653-106418
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000898_040 0.0 - - ankyrin repeat-containing protein, putative [Ricinus communis]
2 Hb_000409_020 0.0627356252 - - PREDICTED: V-type proton ATPase subunit d2 [Jatropha curcas]
3 Hb_002217_300 0.0693631683 - - PREDICTED: pentatricopeptide repeat-containing protein At3g48810 [Jatropha curcas]
4 Hb_000207_250 0.0709143125 - - Non-imprinted in Prader-Willi/Angelman syndrome region protein, putative [Ricinus communis]
5 Hb_000907_080 0.0780467094 - - PREDICTED: uncharacterized protein LOC105640819 [Jatropha curcas]
6 Hb_004109_090 0.0785516062 - - ubiquitin-protein ligase, putative [Ricinus communis]
7 Hb_000080_190 0.0825635514 - - -
8 Hb_000832_020 0.0844147762 transcription factor TF Family: B3 hypothetical protein EUGRSUZ_D00268 [Eucalyptus grandis]
9 Hb_005625_020 0.084593721 transcription factor TF Family: bZIP PREDICTED: ABSCISIC ACID-INSENSITIVE 5-like protein 2 isoform X1 [Jatropha curcas]
10 Hb_002687_110 0.085348322 - - PREDICTED: uncharacterized WD repeat-containing protein C343.04c isoform X1 [Jatropha curcas]
11 Hb_000169_090 0.0854776334 - - PREDICTED: sodium/hydrogen exchanger 2-like [Jatropha curcas]
12 Hb_002016_110 0.0885567536 - - transducin family protein [Populus trichocarpa]
13 Hb_000032_100 0.0886010077 - - PREDICTED: hydroquinone glucosyltransferase [Vitis vinifera]
14 Hb_006915_050 0.0892592266 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 6-like isoform X1 [Jatropha curcas]
15 Hb_011918_080 0.0893604787 - - PREDICTED: probable serine/threonine protein kinase IREH1 isoform X2 [Jatropha curcas]
16 Hb_001248_130 0.091113038 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 69 isoform X1 [Jatropha curcas]
17 Hb_001085_170 0.0913874083 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 2 isoform X1 [Jatropha curcas]
18 Hb_004738_040 0.0920293426 - - PREDICTED: serine/threonine-protein kinase EDR1-like isoform X2 [Populus euphratica]
19 Hb_004046_020 0.092435454 - - PREDICTED: F-box/kelch-repeat protein At5g60570-like [Jatropha curcas]
20 Hb_002299_060 0.0924508545 transcription factor TF Family: FAR1 PREDICTED: probable receptor-like protein kinase At2g39360 [Jatropha curcas]

Gene co-expression network

sample Hb_000898_040 Hb_000898_040 Hb_000409_020 Hb_000409_020 Hb_000898_040--Hb_000409_020 Hb_002217_300 Hb_002217_300 Hb_000898_040--Hb_002217_300 Hb_000207_250 Hb_000207_250 Hb_000898_040--Hb_000207_250 Hb_000907_080 Hb_000907_080 Hb_000898_040--Hb_000907_080 Hb_004109_090 Hb_004109_090 Hb_000898_040--Hb_004109_090 Hb_000080_190 Hb_000080_190 Hb_000898_040--Hb_000080_190 Hb_003206_070 Hb_003206_070 Hb_000409_020--Hb_003206_070 Hb_000409_020--Hb_004109_090 Hb_005663_060 Hb_005663_060 Hb_000409_020--Hb_005663_060 Hb_002687_110 Hb_002687_110 Hb_000409_020--Hb_002687_110 Hb_002016_110 Hb_002016_110 Hb_000409_020--Hb_002016_110 Hb_000832_020 Hb_000832_020 Hb_002217_300--Hb_000832_020 Hb_089032_040 Hb_089032_040 Hb_002217_300--Hb_089032_040 Hb_000185_040 Hb_000185_040 Hb_002217_300--Hb_000185_040 Hb_005490_030 Hb_005490_030 Hb_002217_300--Hb_005490_030 Hb_002740_180 Hb_002740_180 Hb_002217_300--Hb_002740_180 Hb_004976_030 Hb_004976_030 Hb_000207_250--Hb_004976_030 Hb_001248_130 Hb_001248_130 Hb_000207_250--Hb_001248_130 Hb_189003_080 Hb_189003_080 Hb_000207_250--Hb_189003_080 Hb_000207_250--Hb_000409_020 Hb_000207_250--Hb_000907_080 Hb_008695_210 Hb_008695_210 Hb_000907_080--Hb_008695_210 Hb_000907_080--Hb_189003_080 Hb_006915_050 Hb_006915_050 Hb_000907_080--Hb_006915_050 Hb_000001_140 Hb_000001_140 Hb_000907_080--Hb_000001_140 Hb_000907_080--Hb_000409_020 Hb_003175_010 Hb_003175_010 Hb_004109_090--Hb_003175_010 Hb_003929_160 Hb_003929_160 Hb_004109_090--Hb_003929_160 Hb_004724_200 Hb_004724_200 Hb_004109_090--Hb_004724_200 Hb_001818_090 Hb_001818_090 Hb_004109_090--Hb_001818_090 Hb_004109_090--Hb_005663_060 Hb_000080_190--Hb_002687_110 Hb_005625_020 Hb_005625_020 Hb_000080_190--Hb_005625_020 Hb_004738_040 Hb_004738_040 Hb_000080_190--Hb_004738_040 Hb_009048_040 Hb_009048_040 Hb_000080_190--Hb_009048_040 Hb_000080_190--Hb_000409_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
16.7143 7.9924 6.19756 12.2124 20.8674 22.4075
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
18.9546 13.4607 34.4108 12.0111 10.0826

CAGE analysis