Hb_000898_090

Information

Type transcription factor
Description TF Family: GNAT
Location Contig898: 217271-223757
Sequence    

Annotation

kegg
ID rcu:RCOM_0282290
description N-acetyltransferase, putative
nr
ID XP_012071620.1
description PREDICTED: uncharacterized protein LOC105633600 isoform X1 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067L3X8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04122 PE=4 SV=1
Gene Ontology
ID GO:0016746
description acyl- n-acyltransferases superfamily protein isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_61795: 217183-223817
cDNA
(Sanger)
(ID:Location)		 008_E20.ab1: 217183-223453

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000898_090 0.0 transcription factor TF Family: GNAT PREDICTED: uncharacterized protein LOC105633600 isoform X1 [Jatropha curcas]
2 Hb_134949_010 0.1084068664 - - PREDICTED: uncharacterized protein LOC105629574 [Jatropha curcas]
3 Hb_000029_330 0.1085327416 - - PREDICTED: protein TIC 62, chloroplastic [Jatropha curcas]
4 Hb_001195_290 0.1099473508 - - PREDICTED: uncharacterized protein LOC105633792 [Jatropha curcas]
5 Hb_007803_040 0.1186191592 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP37, chloroplastic [Jatropha curcas]
6 Hb_001517_010 0.1258511077 - - conserved hypothetical protein [Ricinus communis]
7 Hb_001584_210 0.1268712794 - - PREDICTED: chloroplast stem-loop binding protein of 41 kDa b, chloroplastic [Jatropha curcas]
8 Hb_000723_320 0.1281253033 - - PREDICTED: putative cyclic nucleotide-gated ion channel 15 [Jatropha curcas]
9 Hb_006472_040 0.1288038736 - - PREDICTED: inner membrane protein PPF-1, chloroplastic [Jatropha curcas]
10 Hb_000107_540 0.1314836781 - - PREDICTED: uncharacterized protein LOC105635335 [Jatropha curcas]
11 Hb_003602_100 0.1335331411 - - Glutamyl-tRNA reductase 1, chloroplast precursor, putative [Ricinus communis]
12 Hb_000856_280 0.1339996127 - - PREDICTED: uncharacterized protein LOC105640491 [Jatropha curcas]
13 Hb_005523_040 0.1340298741 - - PREDICTED: uncharacterized protein LOC100253680 [Vitis vinifera]
14 Hb_002477_020 0.1340524345 - - PREDICTED: uncharacterized protein LOC105631402 [Jatropha curcas]
15 Hb_002071_030 0.1352146807 - - PREDICTED: ACT domain-containing protein ACR11-like isoform X1 [Gossypium raimondii]
16 Hb_002475_060 0.1367616724 - - PREDICTED: potassium channel SKOR-like isoform X1 [Jatropha curcas]
17 Hb_000035_340 0.1377225751 - - conserved hypothetical protein [Ricinus communis]
18 Hb_002333_040 0.1381654751 - - hypothetical protein CISIN_1g015895mg [Citrus sinensis]
19 Hb_005348_120 0.1398027483 - - PREDICTED: chlorophyll a-b binding protein, chloroplastic [Jatropha curcas]
20 Hb_009296_030 0.1409006158 - - PREDICTED: uncharacterized protein LOC105634328 [Jatropha curcas]

Gene co-expression network

sample Hb_000898_090 Hb_000898_090 Hb_134949_010 Hb_134949_010 Hb_000898_090--Hb_134949_010 Hb_000029_330 Hb_000029_330 Hb_000898_090--Hb_000029_330 Hb_001195_290 Hb_001195_290 Hb_000898_090--Hb_001195_290 Hb_007803_040 Hb_007803_040 Hb_000898_090--Hb_007803_040 Hb_001517_010 Hb_001517_010 Hb_000898_090--Hb_001517_010 Hb_001584_210 Hb_001584_210 Hb_000898_090--Hb_001584_210 Hb_002071_030 Hb_002071_030 Hb_134949_010--Hb_002071_030 Hb_134949_010--Hb_001517_010 Hb_134949_010--Hb_001195_290 Hb_134949_010--Hb_000029_330 Hb_000317_180 Hb_000317_180 Hb_134949_010--Hb_000317_180 Hb_009296_030 Hb_009296_030 Hb_134949_010--Hb_009296_030 Hb_001266_160 Hb_001266_160 Hb_000029_330--Hb_001266_160 Hb_000029_330--Hb_000317_180 Hb_002835_090 Hb_002835_090 Hb_000029_330--Hb_002835_090 Hb_004979_050 Hb_004979_050 Hb_000029_330--Hb_004979_050 Hb_006472_040 Hb_006472_040 Hb_001195_290--Hb_006472_040 Hb_001195_290--Hb_001517_010 Hb_008112_020 Hb_008112_020 Hb_001195_290--Hb_008112_020 Hb_005210_010 Hb_005210_010 Hb_001195_290--Hb_005210_010 Hb_001268_170 Hb_001268_170 Hb_001195_290--Hb_001268_170 Hb_002485_050 Hb_002485_050 Hb_007803_040--Hb_002485_050 Hb_000856_280 Hb_000856_280 Hb_007803_040--Hb_000856_280 Hb_009393_130 Hb_009393_130 Hb_007803_040--Hb_009393_130 Hb_005488_190 Hb_005488_190 Hb_007803_040--Hb_005488_190 Hb_003605_060 Hb_003605_060 Hb_007803_040--Hb_003605_060 Hb_000544_070 Hb_000544_070 Hb_007803_040--Hb_000544_070 Hb_000107_540 Hb_000107_540 Hb_001517_010--Hb_000107_540 Hb_005523_040 Hb_005523_040 Hb_001517_010--Hb_005523_040 Hb_001517_010--Hb_001584_210 Hb_001691_180 Hb_001691_180 Hb_001517_010--Hb_001691_180 Hb_011344_030 Hb_011344_030 Hb_001584_210--Hb_011344_030 Hb_002003_130 Hb_002003_130 Hb_001584_210--Hb_002003_130 Hb_002333_040 Hb_002333_040 Hb_001584_210--Hb_002333_040 Hb_007044_270 Hb_007044_270 Hb_001584_210--Hb_007044_270 Hb_001584_210--Hb_001195_290
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.269665 0.375846 6.91171 3.17495 0.54051 0.377962
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.573133 0.485489 0 0.598143 17.1548

CAGE analysis